John Carman

Dr. John Carman

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 March 2019 in Journal of Experimental Botany
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Journal Article
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Emidio AlbertiniEmidio Albertini
Emidio Albertini
Gianni BarcacciaGianni Barcaccia
Gianni Barcaccia
JCJohn Carman
John Carman
Fulvio PupilliFulvio Pupilli
Fulvio Pupilli
In angiosperms, there are two pathways of reproduction through seeds: sexual, or amphimictic, and asexual, or apomictic. The essential feature of apomixis is that an embryo in an ovule is formed autonomously. It may form from a cell of the nucellus or integuments in an otherwise sexual ovule, a process referred to as adventitious embryony. Alternatively, the embryo may form by parthenogenesis from an unreduced egg that forms in an unreduced embryo sac. The latter may form from an ameiotic megasporocyte, in which case it is referred to as diplospory, or from a cell of the nucellus or integument, in which case it is referred to as apospory. Progeny of apomictic plants are generally identical to the mother plant. Apomixis has been seen over the years as either a gain- or loss-of-function over sexuality, implying that the latter is the default condition. Here, we consider an additional point of view, that apomixis may be anciently polyphenic with sex and that both reproductive phenisms involve anciently canalized components of complex molecular processes. This polyphenism viewpoint suggests that apomixis fails to occur in obligately sexual eukaryotes because genetic or epigenetic modifications have silenced the primitive sex apomixis switch and/or disrupted molecular capacities for apomixis. In eukaryotes where sex and apomixis are clearly polyphenic, apomixis exponentially drives clonal fecundity during reproductively favorable conditions, while stress induces sex for stress-tolerant spore or egg formation. The latter often guarantees species survival during environmentally harsh seasons.

1 January 2011 in BMC Plant Biology
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Journal Article
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JCJohn Carman
John Carman
MJMichelle Jamison
Michelle Jamison
EEEstella Elliott
Estella Elliott
KDKrishna K Dwivedi
Krishna K Dwivedi
TNTamara N Naumova
Tamara N Naumova
Genetically unreduced (2n) embryo sacs (ES) form in ovules of gametophytic apomicts, the 2n eggs of which develop into embryos parthenogenetically. In many apomicts, 2n ES form precociously during ovule development. Whether meiosis and sexual ES formation also occur precociously in facultative apomicts (capable of apomictic and sexual reproduction) has not been studied. We determined onset timing of meiosis and sexual ES formation for 569 Sorghum bicolor genotypes, many of which produced 2n ES facultatively.

31 May 2019 in Frontiers in Plant Science
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JCJohn Carman
John Carman
MAMayelyn Mateo de Arias
Mayelyn Mateo de Arias
LGLei Gao
Lei Gao
XZXinghua Zhao
Xinghua Zhao
BKBecky M. Kowallis
Becky M. Kowallis
MWMichael D. Windham
Michael D. Windham
Apomixis (asexual seed formation) in angiosperms occurs either sporophytically, through adventitious embryony, or gametophytically, where an unreduced female gametophyte (embryo sac) forms and produces an unreduced egg that develops into an embryo parthenogenetically. Multiple types of gametophytic apomixis occur, and these are differentiated based on where and when the unreduced gametophyte forms, a process referred to as apomeiosis. Apomeiotic gametophytes form directly from ameiotic megasporocytes, as in Antennaria-type diplospory, from unreduced spores derived from 1st division meiotic restitutions, as in Taraxacum-type diplospory, or from cells of the ovule wall, as in Hieracium-type apospory. Multiple types of apomeiosis occasionally occur in the same plant, which suggests that the different types occur in response to temporal and/or spatial shifts in termination of sexual processes and onset timing of apomeiosis processes. To better understand the origins and evolutionary implications of apomixis in Boechera (Brassicaceae), we determined apomeiosis type for 64 accessions representing 44 taxonomic units. Plants expressing apospory and diplospory were equally common, and these generally produced reduced and unreduced pollen, respectively. Apospory and diplospory occurred simultaneously in individual plants of seven taxa. In Boechera, apomixis perpetuates otherwise sterile or semisterile interspecific hybrids (allodiploids) through multiple generations. Accordingly, ample time, in these multigenerational clones, is available for rare meioses to produce haploid, intergenomically recombined male and female gametes. The fusion of such gametes could then produce segmentally autoploidized progeny. If sex re-emerges among such progeny, then new and genomically unique sexual species could evolve. Herein, we present evidence that such apomixis-facilitated speciation is occurring in Boechera, and we hypothesize that it might also be occurring in facultatively apomictic allodiploids of other angiospermous taxa.

2 December 2020 in Genes
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Mayelyn Mateo de AriasMayelyn Mateo de Arias
Mayelyn Mateo de Arias
LGLei Gao
Lei Gao
DSDavid A. Sherwood
David A. Sherwood
KDKrishna K. Dwivedi
Krishna K. Dwivedi
BPBo Price
Bo Price
JCJohn Carman
John Carman
In angiosperms, meiotic failure coupled with the formation of genetically unreduced gametophytes in ovules (apomeiosis) constitute major components of gametophytic apomixis. These aberrant developmental events are generally thought to be caused by mutation. However, efforts to locate the responsible mutations have failed. Herein, we tested a fundamentally different hypothesis: apomeiosis is a polyphenism of meiosis, with meiosis and apomeiosis being maintained by different states of metabolic homeostasis. Microarray analyses of ovules and pistils were used to differentiate meiotic from apomeiotic processes in Boechera (Brassicaceae). Genes associated with translation, cell division, epigenetic silencing, flowering, and meiosis characterized sexual Boechera (meiotic). In contrast, genes associated with stress responses, abscisic acid signaling, reactive oxygen species production, and stress attenuation mechanisms characterized apomictic Boechera (apomeiotic). We next tested whether these metabolic differences regulate reproductive mode. Apomeiosis switched to meiosis when premeiotic ovules of apomicts were cultured on media that increased oxidative stress. These treatments included drought, starvation, and H2O2 applications. In contrast, meiosis switched to apomeiosis when premeiotic pistils of sexual plants were cultured on media that relieved oxidative stress. These treatments included antioxidants, glucose, abscisic acid, fluridone, and 5-azacytidine. High-frequency apomeiosis was initiated in all sexual species tested: Brassicaceae, Boechera stricta, Boechera exilis, and Arabidopsis thaliana; Fabaceae, Vigna unguiculata; Asteraceae, Antennaria dioica. Unreduced gametophytes formed from ameiotic female and male sporocytes, first division restitution dyads, and nucellar cells. These results are consistent with modes of reproduction and types of apomixis, in natural apomicts, being regulated metabolically.

31 July 2014 in Annals of Botany
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KDKrishna K. Dwivedi
Krishna K. Dwivedi
DRDominique J. Roche
Dominique J. Roche
TCTom E. Clemente
Tom E. Clemente
ZGZhengxiang Ge
Zhengxiang Ge
JCJohn Carman
John Carman
During seed fill in cereals, nutrients are symplasmically unloaded to vascular parenchyma in ovules, but thereafter nutrient transport is less certain. In Zea mays, two mechanisms of nutrient passage through the chalaza and nucellus have been hypothesized, apoplasmic and symplasmic. In a recent study, nutrients first passed non-selectively to the chalazal apoplasm and were then selectively absorbed by the nucellus before being released to the endosperm apoplasm. This study reports that the promoter of OUTER CELL LAYER3 (PSbOCL3) from Sorghum bicolor (sorghum) directs gene expression to chalazal cells where the apoplasmic barrier is thought to form. The aims were to elucidate PSbOCL3 expression patterns in sorghum and relate them to processes of nutrient pathway development in kernels and to recognized functions of the homeodomain-leucine zipper (HD-Zip) IV transcription factor family to which the promoter belongs. PSbOCL3 was cloned and transformed into sorghum as a promoter–GUS (β-glucuronidase) construct. Plant tissues from control and transformed plants were then stained for GUS, and kernels were cleared and characterized using differential interference contrast microscopy. A symplasmic disconnect between the chalaza and nucellus during seed fill is inferred by the combination of two phenomena: differentiation of a distinct nucellar epidermis adjacent to the chalaza, and lysis of GUS-stained chalazal cells immediately proximal to the nucellar epidermis. Compression of the GUS-stained chalazal cells during kernel maturation produced the kernel abscission zone (closing layer). The results suggest that the HD-Zip IV transcription factor SbOCL3 regulates kernel nutrition and abscission. The latter is consistent with evidence that members of this transcription factor group regulate silique abscission and dehiscence in Arabidopsis thaliana. Collectively, the findings suggest that processes of floral organ abscission are conserved among angiosperms and may in some respects differ from processes of leaf abscission.

25 May 2022 in Native Plants Journal
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APAsmita Paudel
Asmita Paudel
YSYouping Sun
Youping Sun
LRLarry A Rupp
Larry A Rupp
JCJohn Carman
John Carman
SLStephen L Love
Stephen L Love
Ceanothus velutinus Douglas ex Hook. (Rhamnaceae; snowbrush ceanothus) is a native evergreen species that may be used in water-efficient landscaping. Few studies, however, have been conducted to clonally propagate this landscape-worthy species. Accordingly, experiments were designed to develop an effective propagation protocol by cuttings. Terminal cuttings of C. velutinus were collected from May to September 2019 from the Tony Grove Lake area of northern Utah. Cuttings were dipped in 1000/500 or 3000/1500 mg/l (1000/500 or 3000/1500 ppm) indole-3-butyric acid (IBA)/1-naphthaleneacetic acid (NAA) as Dip’N Grow or in the talc-based rooting hormone Hormodin 1 (1000 mg/l IBA) (1000 ppm IBA) or Hormodin 2 (3000 mg/l IBA) (3000 ppm IBA) and stuck in a rooting medium consisting of perlite and peat moss (4:1, v:v). Rooting percentage of cuttings collected in July and treated with Hormodin 2 was 22%, which was higher than for cuttings collected in other months or treated with other hormones. Cuttings were collected from the same area from June to August 2020, and similar results were observed. In August 2019, we collected terminal and subterminal cuttings; terminal cuttings performed well when compared to subterminal cuttings. In another experiment, rooting hormones were tested using cuttings collected from greenhouse-grown seedlings that were initially grown from seeds. Based on hierarchical cluster analysis, Hormodin 2 outperformed other hormones. This protocol provides a basis for the propagation of C. velutinus by cuttings. Further research could provide important improvements.