Anna Jarocińska

Dr. Anna Jarocińska

Department of Geoinformatics, Cartography and Remote Sensing, Chair of Geomatics and Information Systems, Faculty of Geography and Regional Studies, University of Warsaw
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Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 December 2018 in Remote Sensing
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Journal Article
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AMAdriana Marcinkowska-Ochtyra
Adriana Marcinkowska-Ochtyra
Anna JarocińskaAnna Jarocińska
Anna Jarocińska
KBKatarzyna Bzdęga
Katarzyna Bzdęga
Barbara Tokarska-GuzikBarbara Tokarska-Guzik
Barbara Tokarska-Guzik
Expansive species classification with remote sensing techniques offers great support for botanical field works aimed at detection of their distribution within areas of conservation value and assessment of the threat caused to natural habitats. Large number of spectral bands and high spatial resolution allows for identification of particular species. LiDAR (Light Detection and Ranging) data provide information about areas such as vegetation structure. Because the species differ in terms of features during the growing season, it is important to know when their spectral responses are unique in the background of the surrounding vegetation. The aim of the study was to identify two expansive grass species: Molinia caerulea and Calamagrostis epigejos in the Natura 2000 area in Poland depending on the period and dataset used. Field work was carried out during late spring, summer and early autumn, in parallel with remote sensing data acquisition. Airborne 1-m resolution HySpex images and LiDAR data were used. HySpex images were corrected geometrically and atmospherically before Minimum Noise Fraction (MNF) transformation and vegetation indices calculation. Based on a LiDAR point cloud generated Canopy Height Model, vegetation structure from discrete and full-waveform data and topographic indexes were generated. Classifications were performed using a Random Forest algorithm. The results show post-classification maps and their accuracies: Kappa value and F1 score being the harmonic mean of producer (PA) and user (UA) accuracy, calculated iteratively. Based on these accuracies and botanical knowledge, it was possible to assess the best identification date and dataset used for analysing both species. For M. caerulea the highest median Kappa was 0.85 (F1 = 0.89) in August and for C. epigejos 0.65 (F1 = 0.73) in September. For both species, adding discrete or full-waveform LiDAR data improved the results. We conclude that hyperspectral (HS) and LiDAR airborne data could be useful to identify grassland species encroaching into Natura 2000 habitats and for supporting their monitoring.

28 September 2019 in Remote Sensing
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AMAdriana Marcinkowska-Ochtyra
Adriana Marcinkowska-Ochtyra
KGKrzysztof Gryguc
Krzysztof Gryguc
Adriana Marcinkowska-OchtyraAdriana Marcinkowska-Ochtyra
Adriana Marcinkowska-Ochtyra
Dominik KopećDominik Kopeć
Dominik Kopeć
Anna JarocińskaAnna Jarocińska
Anna Jarocińska
ŁSŁukasz Sławik
Łukasz Sławik
Accurately identifying Natura 2000 habitat areas with the support of remote sensing techniques is becoming increasingly feasible. Various data types and methods are used for this purpose, and the fusion of data from various sensors and temporal periods (terms) within the phenological cycle allows natural habitats to be precisely identified. This research was aimed at selecting optimal datasets to classify three grassland Natura 2000 habitats (codes 6210, 6410 and 6510) in the Ostoja Nidziańska Natura 2000 site in Poland based on hyperspectral imagery and botanical on-ground reference data acquired in three terms during one vegetative period in 2017 (May, July and September), as well as a digital terrain model (DTM) obtained by airborne laser scanning (ALS). The classifications were carried out using a random forest (RF) algorithm on minimum noise fraction (MNF) transform output bands obtained for single terms, as well as data fusion combining the topographic indices (TOPO) calculated from the DTM, multitemporal hyperspectral data, or a combination of the two. The classification accuracy statistics were analysed in various combinations based on the datasets and their terms of acquisition. Topographic indices improved the classification accuracy of habitats 6210 and 6410, with the greatest impact noted in increased classification accuracy of xerothermic grasslands. The best terms for identifying specific habitats were autumn for 6510 and summer for 6210 and 6410, while the best results overall were obtained by combining data from all terms. The highest obtained values of the F1 coefficient were 84.5% for habitat 6210, 83.2% for habitat 6410, and 69.9% for habitat 6510. Comparing the data fusion results for habitats 6210 and 6410, greater accuracy was obtained by adding topographic indices to multitemporal hyperspectral data, while for habitat 6510, greater accuracy was obtained by fusing only multitemporal hyperspectral data.

11 December 2017 in Remote Sensing
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Bogdan ZagajewskiBogdan Zagajewski
Bogdan Zagajewski
HTHans Tømmervik
Hans Tømmervik
JBJarle W. Bjerke
Jarle W. Bjerke
EREdwin Raczko
Edwin Raczko
ZBZbigniew Bochenek
Zbigniew Bochenek
DZDariusz Ziolkowski
Dariusz Ziolkowski
Remote sensing is a suitable candidate for monitoring rapid changes in Polar regions, offering high-resolution spectral, spatial and radiometric data. This paper focuses on the spectral properties of dominant plant species acquired during the first week of August 2015. Twenty-eight plots were selected, which could easily be identified in the field as well as on RapidEye satellite imagery. Spectral measurements of individual species were acquired, and heavy metal contamination stress factors were measured contemporaneously. As a result, a unique spectral library of dominant plant species, heavy metal concentrations and damage ratios were achieved with an indication that species-specific changes due to environmental conditions can best be differentiated in the 1401–2400 nm spectral region. Two key arctic tundra species, Cassiope tetragona and Dryas octopetala, exhibited significant differences in this spectral region that were linked to a changing health status. Relationships between field and satellite measurements were comparable, e.g., the Red Edge Normalized Difference Vegetation Index (RENDVI) showed a strong and significant relationship (R2 = 0.82; p = 0.036) for the species Dryas octopetala. Cadmium and Lead were below detection levels while manganese, copper and zinc acquired near Longyearbyen were at concentrations comparable to other places in Svalbard. There were high levels of nickel near Longyearbyen (0.014 mg/g), while it was low (0.004 mg/g) elsewhere.

13 January 2017 in International Journal of Remote Sensing
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Journal Article
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AMAdriana Marcinkowska-Ochtyra
Adriana Marcinkowska-Ochtyra
Bogdan ZagajewskiBogdan Zagajewski
Bogdan Zagajewski
Adriana Marcinkowska-OchtyraAdriana Marcinkowska-Ochtyra
Adriana Marcinkowska-Ochtyra
Anna JarocińskaAnna Jarocińska
Anna Jarocińska
BWBronisław Wojtuń
Bronisław Wojtuń
Samantha LavenderSamantha Lavender
Samantha Lavender
The characterization of vegetation is a very important ecological task, especially in sensitive mountain areas, as alpine regions often respond to small short-term variations of abiotic and biotic components as well as long-term global changes. Spatial techniques, such as imaging spectroscopy, allow for detailed classification of different syntaxonomic categories of vegetation and their status. Based on the Airborne Prism Experiment (APEX) and simulated Environmental Mapping and Analysis Program (EnMAP) data, this study focused on subalpine and alpine vegetation mapping in the eastern part of the Polish Karkonosze National Park (KPN). The spatial resolution of APEX (3.12 m) enabled the classification of 21 vegetation communities, which was generalized into eight vegetation types. These types were identified on scaled-up APEX data, as both 252 bands from most of the spectral range and a spectrally reduced dataset of 30 minimum noise fraction (MNF) transforms, and compared to the simulated (30 m spatial resolution) EnMAP data using test areas extracted from the field survey derived reference non-forest vegetation map. After preprocessing, a pixel purity index (PPI) was calculated using the MNF image and then the training and validation pixels were selected with Support Vector Machine classification of vegetation communities carried out using different kernel functions: linear, polynomial, radial basis function, and sigmoid. The classification accuracy was obtained for 21 base classes, and the best result was achieved by using the linear function and 252 bands (overall accuracy (OA) of 74.39%). The next step was to classify the eight generalized vegetation types, and the OA for the APEX data reached 90.72% while EnMAP reached 78.25%. The results show the potential use of APEX and EnMAP imagery in mapping subalpine and alpine vegetation on a community and vegetation-type scales, within a diverse ecosystem such as the Karkonosze National Park.

7 April 2018 in Remote Sensing
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Adriana Marcinkowska-OchtyraAdriana Marcinkowska-Ochtyra
Adriana Marcinkowska-Ochtyra
Bogdan ZagajewskiBogdan Zagajewski
Bogdan Zagajewski
EREdwin Raczko
Edwin Raczko
Adriana Marcinkowska-OchtyraAdriana Marcinkowska-Ochtyra
Adriana Marcinkowska-Ochtyra
Anna JarocińskaAnna Jarocińska
Anna Jarocińska
Mapping plant communities is a difficult and time consuming endeavor. Methods relying on field surveys deliver high quality data but are usually limited to relatively small areas. In this paper we apply airborne hyperspectral data to vegetation mapping in remote and hard to reach areas. We classified 22 vegetation communities in the Giant Mountains on 3.12-m Airborne Prism Experiment (APEX) hyperspectral images, registered in 288 spectral bands (10 September 2012). As the classification algorithm, Support Vector Machines (SVM) was used. APEX data were corrected geometrically and atmospherically, and three dimensionality reduction methods were performed to select the best dataset. As reference we used a non-forest vegetation map containing vegetation communities of Polish Karkonosze National Park from 2002, orthophotomap and field surveys data from 2013 to 2014. We obtained the post-classification maps of 22 vegetation communities, lakes and areas without any vegetation. Iterative accuracy assessment repeated 100 times was used to obtain the most objective results for individual communities. The median value of overall accuracy (OA) was 84%. Fourteen out of twenty-four classes were classified of more than 80% of producer accuracy (PA) and sixteen out of twenty-four of user accuracy (UA). APEX data and SVM with the use of iterative accuracy assessment are useful for the mountain communities classification. This can support both Polish and Czech national parks management by giving the information about diversity of communities in the whole transboundary area, helping with identification especially in changing environment caused by humans.

11 January 2022 in ISPRS Journal of Photogrammetry and Remote Sensing
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Journal Article
Open access
Anna JarocińskaAnna Jarocińska
Anna Jarocińska
Dominik KopećDominik Kopeć
Dominik Kopeć
Marlena KyckoMarlena Kycko
Marlena Kycko
HPHubert Piórkowski
Hubert Piórkowski
ABAgnieszka Błońska
Agnieszka Błońska