Shijun Li

Dr. Shijun Li

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2020 in Genomics
Verified
Journal Article
Closed access
SLShijun Li
Shijun Li
RKRajwali Khan
Rajwali Khan
Sayed Haidar Abbas RazaSayed Haidar Abbas Raza
Sayed Haidar Abbas Raza
HJHong Jieyun
Hong Jieyun
MCMei Chugang
Mei Chugang
LZLinsen Zan
Linsen Zan

22 October 2020 in Animals
Verified
Journal Article
Open access
PDF file
SLShijun Li
Shijun Li
Sayed Haidar Abbas RazaSayed Haidar Abbas Raza
Sayed Haidar Abbas Raza
CZChunping Zhao
Chunping Zhao
GCGong Cheng
Gong Cheng
LZLinsen Zan
Linsen Zan
Perilipin 1 (PLIN1) is a protein encoded by the PLIN1 gene in eukaryotes. PLIN1 is a member of the PAT protein family, a family of proteins related to lipid droplet (LD) surface proteins. PLIN1 phosphorylation plays a vital role during fat metabolism of adipose tissue lipolysis and fat storage in adipocytes. However, to further explore the regulation of the PLIN1 gene on the proliferation, differentiation and lipid metabolism of bovine adipocytes. In this study, the mRNA expression of PLIN1, at day six, was the highest during bovine adipocyte differentiation. Moreover, PLIN1 can promote the proliferation and differentiation of preadipocytes in cattle. On the sixth day, after transfection with, and overexpression of, the PLIN1 gene in bovine preadipocytes via adenovirus, cell samples were collected, and transcriptome sequencing was performed. A total of 1923 differentially expressed genes were detected. Through GO and KEGG pathway analysis, the differentially expressed genes were established to be mainly enriched in the AMPK, Wnt, and PPAR signaling pathways related to fat proliferation and differentiation. In conclusion, at the transcriptional level, PLIN1 plays an important role in regulating fat proliferation and metabolism. Additionally, the sequencing results screened new differentially expressed genes related to fat metabolism, providing theoretical support for molecular breeding of Qinchuan beef cattle.

24 September 2021 in Animals
Verified
Journal Article
Open access
PDF file
XLXuchun Liu
Xuchun Liu
SLShijun Li
Shijun Li
LWLiyun Wang
Liyun Wang
WZWeiyi Zhang
Weiyi Zhang
YWYujuan Wang
Yujuan Wang
CZChunping Zhao
Chunping Zhao
FATP1 plays an important role in the regulation of fatty acid metabolism and lipid accumulation. In this study, we investigated the patterns of FATP1 expression in various tissues obtained from calf and adult Qinchuan cattle, and in differentiating adipocytes. Next, we investigated the effect of FATP1 expression on preadipocyte differentiation in Qinchuan cattle using overexpression and interference assays. We also identified the differentially expressed genes (DEGs) and pathways associated with FATP1 overexpression/interference. Our results reveal that FATP1 was broadly expressed in heart, kidney, muscle, small intestine, large intestine, and perirenal fat tissues. While FATP1 overexpression promoted preadipocyte differentiation, fat deposition, and the expression of several genes involved in fat metabolism, FATP1 interference had the opposite effects on adipocyte differentiation. Following FATP1 overexpression and FATP1 interference in adipocytes, RNA-seq analysis was performed to identify DEGs related to fat metabolism. The DEGs identified include SLPI, STC1, SEMA6A, TNFRSF19, SLN, PTGS2, ADCYP1, FADS2, and SCD. Pathway analysis revealed that the DEGs were enriched in the PPAR signaling pathway, AMPK signal pathway, and Insulin signaling pathway. Our results provide an in-depth understanding of the function and regulation mechanism of FAPT1 in fat metabolism.

23 October 2025 in Functional & Integrative Genomics
Verified
Journal Article
Closed access
PDF file
QCQing Cui
Qing Cui
GWGang Wu
Gang Wu
MNMengmeng Ni
Mengmeng Ni
SLShijun Li
Shijun Li

19 May 2026 in Frontiers in Neuroinformatics
Verified
Journal Article
Open access
PDF file
XDXinwei Du
Xinwei Du
SLShijun Li
Shijun Li
XWXiaojun Wang
Xiaojun Wang
YSYuan Shen
Yuan Shen
TQTingwei Quan
Tingwei Quan
Vascular network reconstruction is a crucial step in extracting vessel morphology and establishing its topological relationships from biological imaging data, holding significant scientific importance for studying brain structure and function, metabolism, and disease mechanisms. Current methods for vascular network reconstruction typically follow a “segment-first, then reconstruct” pipeline: first generating a binary segmentation from vascular images, followed by topological modeling. However, due to significant variations in vessel diameters, frequent presence of luminal voids in large vessels, and the complex, densely distributed nature of capillaries, existing approaches still face notable limitations in reconstruction accuracy. To address this, this study introduces and releases an annotated dataset of mouse brain vasculature. The dataset comprises 60 3D image blocks with the size of 512 × 512 × 512 acquired from four mouse brain samples using fluorescence micro-optical sectioning tomography (fMOST) imaging. It encompasses diverse structural morphologies ranging from large vessels to capillaries, with detailed annotations specifically targeting challenging vascular regions. Additionally, we provide a standardized vascular annotation pipeline and associated tools. This dataset aims to serve as a benchmark to support the development, evaluation, and comparison of algorithms for vascular network segmentation, reconstruction, and related tasks.

17 March 2026 in Genomics
Verified
Journal Article
Open access
QCQing Cui
Qing Cui
GWGang Wu
Gang Wu
QCQianyun Chen
Qianyun Chen
YFYubo Feng
Yubo Feng
FSFudong Shang
Fudong Shang
SLShijun Li
Shijun Li
The fat mass and obesity-associated (FTO) gene, though widely studied in human obesity and livestock lipid accumulation, remains poorly understood in bovine adipogenesis. This study investigated its role in bovine adipocytes via overexpression, given its high expression in Guanling cattle adipose tissue. Results demonstrated that FTO significantly increased triglyceride content, adiponectin secretion, and lipid droplet accumulation (P < 0.01). It also upregulated key adipogenic markers (PPARγ, C/EBPβ, FABP4, LPL; P < 0.05). Transcriptomic analysis revealed that FTO promotes adipocyte differentiation and lipogenesis through regulating multiple lipid metabolic pathways. These findings reveal that FTO positively regulates bovine adipocyte differentiation by modulating lipid metabolic networks, thereby filling a critical gap in the understanding of FTO-mediated lipid metabolism in ruminants.