Avian Pathogenic Escherichia coli (APEC) is the contributing agent behind the avian infectious disease colibacillosis, which causes substantial fatalities in poultry industries that has a significant impact on the economy and food safety. Several virulence genes have been shown to be concomitant with the extraintestinal survival of APEC. This study investigates the antibiotic resistance patterns and APEC-associated virulence genes content in Escherichia coli isolated from non-healthy and healthy broiler chickens from a commercial poultry farm in Qatar. A total of 158 E. coli strains were isolated from 47 chickens from five different organs (air sac, cloacal, kidney, liver, and trachea). Based on genetic criteria, 65% were APEC strains containing five or more virulence genes, and 34% were non-pathogenic E. coli (NPEC) strains. The genes ompT, hlyF, iroN, tsh, vat, iss, cvi/cva, and iucD were significantly prevalent in all APEC strains. E. coli isolates showed 96% resistance to at least one of the 18 antibiotics, with high resistance to ampicillin, cephalothin, ciprofloxacin, tetracycline, and fosfomycin. Our findings indicate high antibiotic resistance prevalence in non-healthy and healthy chicken carcasses. Such resistant E. coli can spread to humans. Hence, special programs are required to monitor the use of antibiotics in chicken production in Qatar.

Photodegradation is an important mechanism that affects carbon and nutrient cycling; a significant amount of data has been reported previously. The present review includes the effect of a wider spectrum of solar radiation (sun light, UV, and visible light) on plant litter decay in terrestrial ecosystems. Although the positive effect of photodegradation on decomposition is most common, a substantial number of studies reports contrasting results. Litter from 148 plant species, from 41 families, have been used in photodegradation studies, representing functional groups of trees (33%), graminoids (30%), shrubs (23%), forbs (11%), and peat (1%). Although the majority of studies focused on mass loss, a growing number focuses on nutrient release. Positive effects on mass loss are most common across different climate regions and laboratory studies, whereas “positive” influence and “no effect” on nitrogen and lignin release are equally common in temperate and sub-tropical environments. This may potentially be due to other decomposition processes which increase in relevance with increasing moisture and can facilitate microbial activity, leaching, and fractioning by soil fauna. In addition to climate region, initial litter quality influences photodegradation. Field-based and laboratory experiments frequently obtain contrasting results, suggesting that the mechanisms controlling the responses are unclear and might be dependent on several interactions, and/or the differences in experimental approaches (such as UV filters), or coverage by particles. Future research should focus on interactions between different factors, and on conducting experiments that test specific relationships such as the potential interaction between photodegradation, soil moisture, microbial communities, soil fauna, and their effects on litter decomposition (both mass loss and nutrient release). Furthermore, the topic would benefit from international studies applying the same experimental approach, as has successfully been conducted in other fields.

The date palm (Phoenix dactylifera) is an important cultivated crop in arid areas. Here, we studied the effect of plant genotype and type of fertilizers on the eukaryotic community structures of the date palm rhizosphere. Samples were collected from one wild population, five cultivars from two farms, and a factorial fertilizer experiment (organic, chemical, and biofertilizer) in Qatar. The eukaryotic communities were sequenced using a next-generation sequencing method. A total of 2422 Operational Taxonomic Units (OTUs) were identified as belonging to 15 phyla, Chlorophyta, Streptophyta, Imbricatea, Chytridiomycota, Ascomycota, Olpidiomycota, being dominant. The wild-type date palms showed a low number of OTUs compared to cultivated date palms, potentially due to the strong influence of soil salinity and low moisture level. However, the wild-type date palm hosted the highest number of unique OTUs. PCA revealed that the eukaryotic microbiome of the wild date palms was separated from the cultivated date palms and that the eukaryotic microbial diversity varied between date palm cultivars in similar environments. Using the highest amounts of biofertilizer and chemical fertilizer decreased the species diversity within the samples. However, a high concentration of biofertilizer combined with a low concentration of chemical fertilizers enhanced the eukaryotic diversity within the samples. We conclude that cultivar type (biotic factor), type of fertilizer, and dosage (abiotic factor) play significant roles in determining the microbiome diversity of the rhizosphere. The wild date palm population could potentially host salt and drought-tolerating eukaryotes that should be further investigated for future development of biofertilizers suitable for drylands.

Antibiotic resistance (ABR) is a global concern, exacerbated by widespread antibiotics use in livestock, particularly in poultry systems where detection rates are high. This review systematically evaluates the literature, 71 studies (2014–2024) from NCBI, Google Scholar, and ScienceDirect, to assess the dynamics of ABR in agricultural soils using poultry manure. The analysis emphasizes the genetic landscape of ABR, soil's emerging contaminants like antibiotic resistance bacteria (ARB), and antibiotic resistance genes (ARGs). Tetracycline resistance was the most frequently reported, ranging from < 10% in chicken manure (China & Canada) to 98.28% in chicken fecal samples (Panama). β-lactams in manure spanned < 5% in Canada to > 93.65% in Uganda, followed by aminoglycoside resistance 10%-92.8% (chicken feces, China). Fluoroquinolone-carbenicillin-amoxicillin (FCA) varied from 2.5% (feces, China) to 90% (feces, Guangdong Province, China), Macrolides-lincosamide-streptogramin B (MLSB) and sulphonamide ranged from 5.7%-72.4% and 1.3%-66.7% respectively, with lower rates in chicken manure from China and higher rates in Israel. Over half of the 37 studies on multidrug resistance (MDR), originated from China, with Shandong Province revealing a high rate of 91.07%. The presence of microorganisms like E. coli , S. enterica , K. pneumoniae , Pseudomonas spp ., and Staphylococcus spp. highlights the threat of ESKAPEE ( Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, Enterobacter species, Escherichia coli ) pathogens. These MDR bacteria pose risks in clinical and agricultural settings, challenging healthcare and public health. Understanding ARG prevalence in the poultry sector is vital for developing strategies, including manure treatment technologies, probiotic and natural antimicrobial alternatives, and surveillance tools, alongside the global action plans to curb environmental spread.