This study provides an inventory of the recent benthic macrofaunal communities in the entire Baltic Sea. The analyses of soft-bottom benthic invertebrate community data based on over 7000 locations in the Baltic Sea suggested the existence of 10 major communities based on species abundances and 17 communities based on species biomasses, respectively. The low-saline northern Baltic, characterized by silty sediments, is dominated by Monoporeia affinis, Marenzelleria spp., and Macoma balthica. Hydrobiidae, Pygospio elegans, and Cerastoderma glaucum dominate the community in sandy habitats off the Estonian west coast and in the southeastern and southern Baltic Sea. Deep parts of the Gulf of Finland and central Baltic Sea often experience hypoxia, and when oxygen levels in these regions recover, Bylgides sarsi was the first species to colonize. The southwestern Baltic Sea, with high salinity, has higher macrofaunal diversity compared with the northern parts. To spatially interpolate the distribution of the major communities, we used the Random Forest method. Substrate data, bathymetric maps, and modelled hydrographical fields were used as predictors. Model predictions were in good agreement with observations, quantified by Cohen's κ of 0.90 for the abundance and 0.89 in the wet weight-based model. Misclassifications were mainly associated with uncommon classes in regions with high spatial variability. Our analysis provides a detailed baseline map of the distribution of benthic communities in the Baltic Sea to be used both in science and management.

Many studies show that habitat complexity or habitat diversity plays a major role in biodiversity throughout different spatial scales: as structural heterogeneity increases, so does the number of available (micro-) habitats for the potential species inventory. The capability of housing species (even rare species) increases rapidly with increasing habitat heterogeneity. However, habitat complexity is not easy to measure in marine sublittoral sediments. In our study, we came up with a proposal to estimate sublittoral benthic habitat complexity using standard underwater video techniques. This tool was subsequently used to investigate the effect of habitat complexity on species richness in comparison to other environmental parameters in a marine protected area situated in the Fehmarn Belt, a narrow strait in the southwestern Baltic Sea. Our results show that species richness is significantly higher in heterogeneous substrates throughout all considered sediment types. Congruently, the presence of rare species increases with structural complexity. Our findings highlight the importance of the availability of microhabitats for benthic biodiversity as well as of the study area for regional ecosystem functioning.

The availability of standardised biomass data is essential for studying population dynamics, energy flows, fisheries and food web interactions. To make the estimates of biomass consistent, weight-to-weight conversion factors are often used, for example to translate more widely available measurements of wet weights into required dry weights and ash-free dry weight metrics. However, for many species and groups the widely applicable freely available conversion factors have until now remained very rough approximations with high degree of taxonomic generalisation. To close up this gap, here for the first time we publish the most detailed and statically robust list of ratios of wet weight (WW), dry weight (DW) and ash-free dry weight (AFDW). The dataset includes over 17 000 records of single measurements for 497 taxa. Along with aggregated calculations, enclosed reference information with sampling dates and geographical coordinates the dataset provides a broad opportunity for reuse and repurposing. It empowers the future user to do targeted sub-selections of data to best combine them with their own local data, instead of only having a single value of conversion factor per region. The dataset can thereby be used to quantify natural variability and uncertainty. The dataset is available via an unrestricted repository from https://doi.org/10.12754/data-2021-0002-01 (Gogina et al., 2021).

An organism’s body condition describes its mass given its length and is often positively associated with fitness. The condition of Atlantic cod (Gadus morhua) in the Baltic Sea has declined dramatically since the early 1990s, possibly due to increased competition for food and hypoxia. However, the effects of biotic and abiotic variables on body condition have not been evaluated at local scales, which is important given spatial heterogeneity. We evaluate changes in distribution, experienced environmental conditions, and individual-level condition of cod in relation to covariates at different spatial scales using geostatistical models with spatial and spatiotemporal random effects. Sprat, Saduria entomon, temperature and oxygen were positively associated with condition, and depth was negatively associated. However, the effects of explanatory variables were small—spatial and spatiotemporal latent variables explained 5.7 times more variation than all covariates together (year excluded). Weighting environmental oxygen with local biomass densities revealed steeper declining trends compared to the unweighted oxygen in the environment, while the effect of weighting was less clear for condition. Understanding the drivers of spatiotemporal variation in body condition is critical for predicting responses to environmental change and to effective fishery management; yet low explanatory power of covariates on individual condition constitutes a major challenge.

During several cruises in the southern Baltic Sea conducted in different seasons from 2014 to 2016, sediment cores were collected for the investigation of pore-water biogeochemistry and associated nutrient fluxes across the sediment-water interface. Six stations were positioned along a salinity gradient (ranging from 22 to 8) and covered various sedimentary habitats ranging from mud to sand. Integrated fluxes of nutrients in the supernatant water and sediment oxygen consumption were additionally derived from incubations of intact sediment cores. Subsequently, sediment from the pore-water and incubation cores was sieved for taxonomic identification and estimation of benthic macrofauna density. This combined dataset was used to determine the dominant factors influencing the vertical distribution of geochemical parameters in the pore-waters of the studied habitats and to find similarities and patterns explaining significant variations of solute fluxes across the sediment-water interface. A statistical relationship between the thickness of sulfide-free surface sediments, solute fluxes of sulfide, ammonium, and phosphate as well as oxygen consumption and taxonomic and functional characteristics of macrobenthic communities were tested. Our data and modeling results indicate that bioturbation and bioirrigation alter near-surface pore-water nutrient concentrations toward bottom water values. Besides sediment properties and microbial activity, the biogeochemical fluxes can further be explained by the functional structure of benthic macrofauna. Community bioturbation potential, species richness, and biomass of biodiffusers were the best proxies among the tested set of biotic and abiotic parameters and could explain 63% of multivariate total benthic flux variations. The effects of macrobenthos on ecosystem functioning differ between sediment types, specific locations and seasons. Both, species distribution and nutrient fluxes are temporally dynamic. Those natural patterns, as well as potential anthropogenic and natural disturbances (e.g., fishery, storm events), may cause impacts on field data in a way beyond our present capability of quantitative prediction, and require more detailed seasonal studies. The data presented here adds to our understanding of the complexity of natural ecosystem functioning under anthropogenic pressure.