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Abdoul Sangaré
Centre d’Infectiologie Charles Mérieux du Mali, Bamako BPE2283, Mali

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Journal article
Published: 02 November 2020 in Viruses
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We are currently facing a pandemic of COVID-19, caused by a spillover from an animal-originating coronavirus to humans occurring in the Wuhan region of China in December 2019. From China, the virus has spread to 188 countries and regions worldwide, reaching the Sahel region on March 2, 2020. Since whole genome sequencing (WGS) data is very crucial to understand the spreading dynamics of the ongoing pandemic, but only limited sequencing data is available from the Sahel region to date, we have focused our efforts on generating the first Malian sequencing data available. Screening 217 Malian patient samples for the presence of SARS-CoV-2 resulted in 38 positive isolates, from which 21 whole genome sequences were generated. Our analysis shows that both the early A (19B) and the later observed B (20A/C) clade are present in Mali, indicating multiple and independent introductions of SARS-CoV-2 to the Sahel region.

ACS Style

Bourema Kouriba; Angela Dürr; Alexandra Rehn; Abdoul Sangaré; Brehima Traoré; Malena Bestehorn-Willmann; Judicael Ouedraogo; Asli Heitzer; Elisabeth Sogodogo; Abderrhamane Maiga; Mathias Walter; Fee Zimmermann; Roman Wölfel; Markus Antwerpen. First Phylogenetic Analysis of Malian SARS-CoV-2 Sequences Provides Molecular Insights into the Genomic Diversity of the Sahel Region. Viruses 2020, 12, 1251 .

AMA Style

Bourema Kouriba, Angela Dürr, Alexandra Rehn, Abdoul Sangaré, Brehima Traoré, Malena Bestehorn-Willmann, Judicael Ouedraogo, Asli Heitzer, Elisabeth Sogodogo, Abderrhamane Maiga, Mathias Walter, Fee Zimmermann, Roman Wölfel, Markus Antwerpen. First Phylogenetic Analysis of Malian SARS-CoV-2 Sequences Provides Molecular Insights into the Genomic Diversity of the Sahel Region. Viruses. 2020; 12 (11):1251.

Chicago/Turabian Style

Bourema Kouriba; Angela Dürr; Alexandra Rehn; Abdoul Sangaré; Brehima Traoré; Malena Bestehorn-Willmann; Judicael Ouedraogo; Asli Heitzer; Elisabeth Sogodogo; Abderrhamane Maiga; Mathias Walter; Fee Zimmermann; Roman Wölfel; Markus Antwerpen. 2020. "First Phylogenetic Analysis of Malian SARS-CoV-2 Sequences Provides Molecular Insights into the Genomic Diversity of the Sahel Region." Viruses 12, no. 11: 1251.

Other
Published: 25 September 2020
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We are currently facing a pandemic of COVID-19, caused by a spillover from an animal-originating coronavirus to humans occuring in the Wuhan region, China, in December 2019. From China the virus has spread to 188 countries and regions worldwide, reaching the Sahel region on the 2nd of March 2020. Since whole genome sequencing (WGS) data is very crucial to understand the spreading dynamics of the ongoing pandemic, but only limited sequence data is available from the Sahel region to date, we have focused our efforts on generating the first Malian sequencing data available. Screening of 217 Malian patient samples for the presence of SARS-CoV-2 resulted in 38 positive isolates from which 21 whole genome sequences were generated. Our analysis shows that both, the early A (19B) and the fast evolving B (20A/C) clade, are present in Mali indicating multiple and independent introductions of the SARS-CoV-2 to the Sahel region.

ACS Style

Bourema Kouriba; A Dürr; Alexandra Rehn; Abdoul Karim Sangare; By Traoré; Malena S Bestehorn-Willmann; Judicael Lj Ouedraogo; Asli Heitzer; Elisabeth Sogodogo; Abderrhamane Maiga; Mathias C Walter; Fee Zimmermann; R Wölfel; Markus H Antwerpen. First phylogenetic analysis of Malian SARS-CoV-2 sequences provide molecular insights into the genomic diversity of the Sahel region. 2020, 1 .

AMA Style

Bourema Kouriba, A Dürr, Alexandra Rehn, Abdoul Karim Sangare, By Traoré, Malena S Bestehorn-Willmann, Judicael Lj Ouedraogo, Asli Heitzer, Elisabeth Sogodogo, Abderrhamane Maiga, Mathias C Walter, Fee Zimmermann, R Wölfel, Markus H Antwerpen. First phylogenetic analysis of Malian SARS-CoV-2 sequences provide molecular insights into the genomic diversity of the Sahel region. . 2020; ():1.

Chicago/Turabian Style

Bourema Kouriba; A Dürr; Alexandra Rehn; Abdoul Karim Sangare; By Traoré; Malena S Bestehorn-Willmann; Judicael Lj Ouedraogo; Asli Heitzer; Elisabeth Sogodogo; Abderrhamane Maiga; Mathias C Walter; Fee Zimmermann; R Wölfel; Markus H Antwerpen. 2020. "First phylogenetic analysis of Malian SARS-CoV-2 sequences provide molecular insights into the genomic diversity of the Sahel region." , no. : 1.