Janita E. van Timmeren

Dr. Janita E. van Timmeren


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
4 October 2017 in Nature Reviews Clinical Oncology
Verified
Journal Article
Closed access
PDF file
PLPhilippe Lambin
Philippe Lambin
RLRalph T.H. Leijenaar
Ralph T.H. Leijenaar
TDTimo M. Deist
Timo M. Deist
JPJurgen Peerlings
Jurgen Peerlings
EJEvelyn E.C. de Jong
Evelyn E.C. de Jong
SWSean Walsh
Sean Walsh

8 September 2017 in Acta Oncologica
Verified
Journal Article
Open access
RLRuben T. H. M. Larue
Ruben T. H. M. Larue
JTJanita E. van Timmeren
Janita E. van Timmeren
EJEvelyn E.C. de Jong
Evelyn E.C. de Jong
GFGiacomo Feliciani
Giacomo Feliciani
RLRalph T. H. Leijenaar
Ralph T. H. Leijenaar
PLPhilippe Lambin
Philippe Lambin
Radiomic analyses of CT images provide prognostic information that can potentially be used for personalized treatment. However, heterogeneity of acquisition- and reconstruction protocols influences robustness of radiomic analyses. The aim of this study was to investigate the influence of different CT-scanners, slice thicknesses, exposures and gray-level discretization on radiomic feature values and their stability. A texture phantom with ten different inserts was scanned on nine different CT-scanners with varying tube currents. Scans were reconstructed with 1.5 mm or 3 mm slice thickness. Image pre-processing comprised gray-level discretization in ten different bin widths ranging from 5 to 50 HU and different resampling methods (i.e., linear, cubic and nearest neighbor interpolation to 1 × 1 × 3 mm3 voxels) were investigated. Subsequently, 114 textural radiomic features were extracted from a 2.1 cm3 sphere in the center of each insert. The influence of slice thickness, exposure and bin width on feature values was investigated. Feature stability was assessed by calculating the concordance correlation coefficient (CCC) in a test-retest setting and for different combinations of scanners, tube currents and slice thicknesses. Bin width influenced feature values, but this only had a marginal effect on the total number of stable features (CCC > 0.85) when comparing different scanners, slice thicknesses or exposures. Most radiomic features were affected by slice thickness, but this effect could be reduced by resampling the CT-images before feature extraction. Statistics feature 'energy' was the most dependent on slice thickness. No clear correlation between feature values and exposures was observed. CT-scanner, slice thickness and bin width affected radiomic feature values, whereas no effect of exposure was observed. Optimization of gray-level discretization to potentially improve prognostic value can be performed without compromising feature stability. Resampling images prior to feature extraction decreases the variability of radiomic features.

1 June 2017 in Radiotherapy and Oncology
Verified
Journal Article
Open access
JTJanita E. van Timmeren
Janita E. van Timmeren
RLRalph T.H. Leijenaar
Ralph T.H. Leijenaar
WEWouter van Elmpt
Wouter van Elmpt
BRBart Reymen
Bart Reymen
COCary Oberije
Cary Oberije
PLPhilippe Lambin
Philippe Lambin
In this study we investigated the interchangeability of planning CT and cone-beam CT (CBCT) extracted radiomic features. Furthermore, a previously described CT based prognostic radiomic signature for non-small cell lung cancer (NSCLC) patients using CBCT based features was validated. One training dataset of 132 and two validation datasets of 62 and 94stage I-IV NSCLC patients were included. Interchangeability was assessed by performing a linear regression on CT and CBCT extracted features. A two-step correction was applied prior to model validation of a previously published radiomic signature. Results 13.3% (149 out of 1119) of the radiomic features, including all features of the previously published radiomic signature, showed an R2 above 0.85 between intermodal imaging techniques. For the radiomic signature, Kaplan-Meier curves were significantly different between groups with high and low prognostic value for both modalities. Harrell's concordance index was 0.69 for CT and 0.66 for CBCT models for dataset 1. Conclusions The results show that a subset of radiomic features extracted from CT and CBCT images are interchangeable using simple linear regression. Moreover, a previously developed radiomics signature has prognostic value for overall survival in three CBCT cohorts, showing the potential of CBCT radiomics to be used as prognostic imaging biomarker.

1 December 2016 in Tomography
Verified
Journal Article
Open access
JTJanita E. van Timmeren
Janita E. van Timmeren
RLRalph T.H. Leijenaar
Ralph T.H. Leijenaar
WEWouter van Elmpt
Wouter van Elmpt
JWJiazhou Wang
Jiazhou Wang
ZZZhen Zhang
Zhen Zhang
Philippe LambinPhilippe Lambin
Philippe Lambin
Radiomics is an objective method for extracting quantitative information from medical images. However, in radiomics, standardization, overfitting, and generalization are major challenges to be overcome. Test–retest experiments can be used to select robust radiomic features that have minimal variation. Currently, it is unknown whether they should be identified for each disease (disease specific) or are only imaging device-specific (computed tomography [CT]-specific). Here, we performed a test–retest analysis on CT scans of 40 patients with rectal cancer in a clinical setting. Correlation between radiomic features was assessed using the concordance correlation coefficient (CCC). In total, only 9/542 features have a CCC > 0.85. Furthermore, results were compared with the test–retest results on CT scans of 27 patients with lung cancer with a 15-minute interval. Results show that 446/542 features have a higher CCC for the test–retest analysis of the data set of patients with lung cancer than for patients with rectal cancer. The importance of controlling factors such as scanners, imaging protocol, reconstruction methods, and time points in a radiomics analysis is shown. Moreover, the results imply that test–retest analyses should be performed before each radiomics study. More research is required to independently evaluate the effect of each factor.

14 June 2022 in Nature Communications
Verified
Journal Article
Open access
PDF file
SPSergey P. Primakov
Sergey P. Primakov
AIAbdalla Ibrahim
Abdalla Ibrahim
JTJanita E. van Timmeren
Janita E. van Timmeren
GWGuangyao Wu
Guangyao Wu
SKSimon A. Keek
Simon A. Keek
Philippe LambinPhilippe Lambin
Philippe Lambin
Detection and segmentation of abnormalities on medical images is highly important for patient management including diagnosis, radiotherapy, response evaluation, as well as for quantitative image research. We present a fully automated pipeline for the detection and volumetric segmentation of non-small cell lung cancer (NSCLC) developed and validated on 1328 thoracic CT scans from 8 institutions. Along with quantitative performance detailed by image slice thickness, tumor size, image interpretation difficulty, and tumor location, we report an in-silico prospective clinical trial, where we show that the proposed method is faster and more reproducible compared to the experts. Moreover, we demonstrate that on average, radiologists & radiation oncologists preferred automatic segmentations in 56% of the cases. Additionally, we evaluate the prognostic power of the automatic contours by applying RECIST criteria and measuring the tumor volumes. Segmentations by our method stratified patients into low and high survival groups with higher significance compared to those methods based on manual contours.

1 January 2017 in Advanced Drug Delivery Reviews
Verified
Journal Article
Closed access
PLPhilippe Lambin
Philippe Lambin
JZJaap Zindler
Jaap Zindler
BVBen G.L. Vanneste
Ben G.L. Vanneste
LVLien Van De Voorde
Lien Van De Voorde
DEDaniëlle Eekers
Daniëlle Eekers
SWSean Walsh
Sean Walsh