James Thorne

Dr. James Thorne

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Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 January 2021 in Proceedings of the National Academy of Sciences
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Journal Article
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CHChristopher A. Halsch
Christopher A. Halsch
ASArthur M. Shapiro
Arthur M. Shapiro
JFJames A. Fordyce
James A. Fordyce
CNChris C. Nice
Chris C. Nice
JTJames Thorne
James Thorne
MFMatthew Forister
Matthew Forister
Insects have diversified through more than 450 million y of Earth’s changeable climate, yet rapidly shifting patterns of temperature and precipitation now pose novel challenges as they combine with decades of other anthropogenic stressors including the conversion and degradation of land. Here, we consider how insects are responding to recent climate change while summarizing the literature on long-term monitoring of insect populations in the context of climatic fluctuations. Results to date suggest that climate change impacts on insects have the potential to be considerable, even when compared with changes in land use. The importance of climate is illustrated with a case study from the butterflies of Northern California, where we find that population declines have been severe in high-elevation areas removed from the most immediate effects of habitat loss. These results shed light on the complexity of montane-adapted insects responding to changing abiotic conditions. We also consider methodological issues that would improve syntheses of results across long-term insect datasets and highlight directions for future empirical work.

10 June 2009 in Diversity and Distributions
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Journal Article
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JWJohn N. Williams
John N. Williams
CSChangwan Seo
Changwan Seo
JTJames Thorne
James Thorne
JNJulie K. Nelson
Julie K. Nelson
SESusan Erwin
Susan Erwin
MSMark W. Schwartz
Mark W. Schwartz
Aim To evaluate a suite of species distribution models for their utility as predictors of suitable habitat and as tools for new population discovery of six rare plant species that have both narrow geographical ranges and specialized habitat requirements.Location The Rattlesnake Creek Terrane (RCT) of the Shasta‐Trinity National Forest in the northern California Coast Range of the United States.Methods We used occurrence records from 25 years of US Forest Service botanical surveys, environmental and remotely sensed climate data to model the distributions of the target species across the RCT. The models included generalized linear models (GLM), artificial neural networks (ANN), random forests (RF) and maximum entropy (ME). From the results we generated predictive maps that were used to identify areas of high probability occurrence. We made field visits to the top‐ranked sites to search for new populations of the target species.Results Random forests gave the best results according to area under the curve and Kappa statistics, although ME was in close agreement. While GLM and ANN also gave good results, they were less restrictive and more varied than RF and ME. Cross‐model correlations were the highest for species with the most records and declined with record numbers. Model assessment using a separate dataset confirmed that RF provided the best predictions of appropriate habitat. Use of RF output to prioritize search areas resulted in the discovery of 16 new populations of the target species.Main conclusions Species distribution models, such as RF and ME, which use presence data and information about the background matrix where species do not occur, may be an effective tool for new population discovery of rare plant species, but there does appear to be a lower threshold in the number of occurrences required to build a good model.

19 January 2010 in Proceedings of the National Academy of Sciences
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Journal Article
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MFMatthew Forister
Matthew Forister
AMAndrew C. McCall
Andrew C. McCall
NSNate Sanders
Nate Sanders
JFJames A. Fordyce
James A. Fordyce
JTJames Thorne
James Thorne
ASArthur M. Shapiro
Arthur M. Shapiro
Climate change and habitat destruction have been linked to global declines in vertebrate biodiversity, including mammals, amphibians, birds, and fishes. However, invertebrates make up the vast majority of global species richness, and the combined effects of climate change and land use on invertebrates remain poorly understood. Here we present 35 years of data on 159 species of butterflies from 10 sites along an elevational gradient spanning 0–2,775 m in a biodiversity hotspot, the Sierra Nevada Mountains of Northern California. Species richness has declined at half of the sites, with the most severe reductions at the lowest elevations, where habitat destruction is greatest. At higher elevations, we observed clear upward shifts in the elevational ranges of species, consistent with the influence of global warming. Taken together, these long-term data reveal the interacting negative effects of human-induced changes on both the climate and habitat available to butterfly species in California. Furthermore, the decline of ruderal, disturbance-associated species indicates that the traditional focus of conservation efforts on more specialized and less dispersive species should be broadened to include entire faunas when estimating and predicting the effects of pervasive stressors.

4 November 2008 in Biology Letters
Verified
Journal Article
Closed access
CSChangwan Seo
Changwan Seo
JTJames Thorne
James Thorne
LHLee Hannah
Lee Hannah
WTWilfried Thuiller
Wilfried Thuiller
Predictions of future species' ranges under climate change are needed for conservation planning, for which species distribution models (SDMs) are widely used. However, global climate model-based (GCM) output grids can bias the area identified as suitable when these are used as SDM predictor variables, because GCM outputs, typically at least 50×50 km, are biologically coarse. We tested the assumption that species ranges can be equally well portrayed in SDMs operating on base data of different grid sizes by comparing SDM performance statistics and area selected by four SDMs run at seven grid sizes, for nine species of contrasting range size. Area selected was disproportionately larger for SDMs run on larger grid sizes, indicating a cut-off point above which model results were less reliable. Up to 2.89 times more species range area was selected by SDMs operating on grids above 50×50 km, compared to SDMs operating at 1 km 2 . Spatial congruence between areas selected as range also diverged as grid size increased, particularly for species with ranges between 20 000 and 90 000 km 2 . These results indicate the need for caution when using such data to plan future protected areas, because an overly large predicted range could lead to inappropriate reserve location selection.

20 January 2015 in Proceedings of the National Academy of Sciences
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Journal Article
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PMPatrick J. McIntyre
Patrick J. McIntyre
JTJames Thorne
James Thorne
CDChristopher R. Dolanc
Christopher R. Dolanc
AFAlan L. Flint
Alan L. Flint
LFLorraine E. Flint
Lorraine E. Flint
DADavid D. Ackerly
David D. Ackerly
Significance: Declines in the number of large trees in temperate and tropical forests have attracted attention, given their disproportionate importance to forest structure, function, and carbon storage. Yet, factors responsible for these declines are unclear. By comparing historic (1930s) and contemporary (2000s) surveys of California forests, we document that across 120,000 km 2 , large trees have declined by up to 50%, corresponding to a 19% decline in average basal area and associated biomass, despite large increases in small tree density. Contemporary forests also exhibit increased dominance by oaks over pines. Both large tree declines and increased oak dominance were associated with increases in climatic water deficit, suggesting that water stress may be contributing to changes in forest structure and function across large areas.

31 July 2013 in Ecological Processes
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Journal Article
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Lorraine E. FlintLorraine E. Flint
Lorraine E. Flint
AFAlan L Flint
Alan L Flint
JTJames Thorne
James Thorne
RBRyan Boynton
Ryan Boynton
Resource managers need spatially explicit models of hydrologic response to changes in key climatic drivers across variable landscape conditions. We demonstrate the utility of a Basin Characterization Model for California (CA-BCM) to integrate high-resolution data on physical watershed characteristics with historical or projected climate data to predict watershed-specific hydrologic responses.