Ye Duan

Dr. Ye Duan

Faculty of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 March 2021 in Cancers
Verified
Journal Article
Open access
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Laith AlzubaidiLaith Alzubaidi
Laith Alzubaidi
MAMuthana Al-Amidie
Muthana Al-Amidie
AAAhmed Al-Asadi
Ahmed Al-Asadi
AHAmjad Humaidi
Amjad Humaidi
Omran Al-ShammaOmran Al-Shamma
Omran Al-Shamma
Ye DuanYe Duan
Ye Duan
Deep learning requires a large amount of data to perform well. However, the field of medical image analysis suffers from a lack of sufficient data for training deep learning models. Moreover, medical images require manual labeling, usually provided by human annotators coming from various backgrounds. More importantly, the annotation process is time-consuming, expensive, and prone to errors. Transfer learning was introduced to reduce the need for the annotation process by transferring the deep learning models with knowledge from a previous task and then by fine-tuning them on a relatively small dataset of the current task. Most of the methods of medical image classification employ transfer learning from pretrained models, e.g., ImageNet, which has been proven to be ineffective. This is due to the mismatch in learned features between the natural image, e.g., ImageNet, and medical images. Additionally, it results in the utilization of deeply elaborated models. In this paper, we propose a novel transfer learning approach to overcome the previous drawbacks by means of training the deep learning model on large unlabeled medical image datasets and by next transferring the knowledge to train the deep learning model on the small amount of labeled medical images. Additionally, we propose a new deep convolutional neural network (DCNN) model that combines recent advancements in the field. We conducted several experiments on two challenging medical imaging scenarios dealing with skin and breast cancer classification tasks. According to the reported results, it has been empirically proven that the proposed approach can significantly improve the performance of both classification scenarios. In terms of skin cancer, the proposed model achieved an F1-score value of 89.09% when trained from scratch and 98.53% with the proposed approach. Secondly, it achieved an accuracy value of 85.29% and 97.51%, respectively, when trained from scratch and using the proposed approach in the case of the breast cancer scenario. Finally, we concluded that our method can possibly be applied to many medical imaging problems in which a substantial amount of unlabeled image data is available and the labeled image data is limited. Moreover, it can be utilized to improve the performance of medical imaging tasks in the same domain. To do so, we used the pretrained skin cancer model to train on feet skin to classify them into two classes—either normal or abnormal (diabetic foot ulcer (DFU)). It achieved an F1-score value of 86.0% when trained from scratch, 96.25% using transfer learning, and 99.25% using double-transfer learning.

29 June 2020 in Applied Sciences
Verified
Journal Article
Open access
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Laith AlzubaidiLaith Alzubaidi
Laith Alzubaidi
Mohammed A. FadhelMohammed A. Fadhel
Mohammed A. Fadhel
Omran Al-ShammaOmran Al-Shamma
Omran Al-Shamma
Jinglan ZhangJinglan Zhang
Jinglan Zhang
José SantamariaJosé Santamaria
José Santamaria
SOSameer R. Oleiwi
Sameer R. Oleiwi
One of the main challenges of employing deep learning models in the field of medicine is a lack of training data due to difficulty in collecting and labeling data, which needs to be performed by experts. To overcome this drawback, transfer learning (TL) has been utilized to solve several medical imaging tasks using pre-trained state-of-the-art models from the ImageNet dataset. However, there are primary divergences in data features, sizes, and task characteristics between the natural image classification and the targeted medical imaging tasks. Therefore, TL can slightly improve performance if the source domain is completely different from the target domain. In this paper, we explore the benefit of TL from the same and different domains of the target tasks. To do so, we designed a deep convolutional neural network (DCNN) model that integrates three ideas including traditional and parallel convolutional layers and residual connections along with global average pooling. We trained the proposed model against several scenarios. We utilized the same and different domain TL with the diabetic foot ulcer (DFU) classification task and with the animal classification task. We have empirically shown that the source of TL from the same domain can significantly improve the performance considering a reduced number of images in the same domain of the target dataset. The proposed model with the DFU dataset achieved F1-score value of 86.6% when trained from scratch, 89.4% with TL from a different domain of the targeted dataset, and 97.6% with TL from the same domain of the targeted dataset.

4 March 2020 in Electronics
Verified
Journal Article
Open access
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Laith AlzubaidiLaith Alzubaidi
Laith Alzubaidi
Mohammed A. FadhelMohammed A. Fadhel
Mohammed A. Fadhel
Omran Al-ShammaOmran Al-Shamma
Omran Al-Shamma
Jinglan ZhangJinglan Zhang
Jinglan Zhang
Ye DuanYe Duan
Ye Duan
Sickle cell anemia, which is also called sickle cell disease (SCD), is a hematological disorder that causes occlusion in blood vessels, leading to hurtful episodes and even death. The key function of red blood cells (erythrocytes) is to supply all the parts of the human body with oxygen. Red blood cells (RBCs) form a crescent or sickle shape when sickle cell anemia affects them. This abnormal shape makes it difficult for sickle cells to move through the bloodstream, hence decreasing the oxygen flow. The precise classification of RBCs is the first step toward accurate diagnosis, which aids in evaluating the danger level of sickle cell anemia. The manual classification methods of erythrocytes require immense time, and it is possible that errors may be made throughout the classification stage. Traditional computer-aided techniques, which have been employed for erythrocyte classification, are based on handcrafted features techniques, and their performance relies on the selected features. They also are very sensitive to different sizes, colors, and complex shapes. However, microscopy images of erythrocytes are very complex in shape with different sizes. To this end, this research proposes lightweight deep learning models that classify the erythrocytes into three classes: circular (normal), elongated (sickle cells), and other blood content. These models are different in the number of layers and learnable filters. The available datasets of red blood cells with sickle cell disease are very small for training deep learning models. Therefore, addressing the lack of training data is the main aim of this paper. To tackle this issue and optimize the performance, the transfer learning technique is utilized. Transfer learning does not significantly affect performance on medical image tasks when the source domain is completely different from the target domain. In some cases, it can degrade the performance. Hence, we have applied the same domain transfer learning, unlike other methods that used the ImageNet dataset for transfer learning. To minimize the overfitting effect, we have utilized several data augmentation techniques. Our model obtained state-of-the-art performance and outperformed the latest methods by achieving an accuracy of 99.54% with our model and 99.98% with our model plus a multiclass SVM classifier on the erythrocytesIDB dataset and 98.87% on the collected dataset.

6 March 2020 in Electronics
Verified
Journal Article
Open access
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Laith AlzubaidiLaith Alzubaidi
Laith Alzubaidi
Omran Al-ShammaOmran Al-Shamma
Omran Al-Shamma
Mohammed A. FadhelMohammed A. Fadhel
Mohammed A. Fadhel
Laith FarhanLaith Farhan
Laith Farhan
Jinglan ZhangJinglan Zhang
Jinglan Zhang
Ye DuanYe Duan
Ye Duan
Breast cancer is a significant factor in female mortality. An early cancer diagnosis leads to a reduction in the breast cancer death rate. With the help of a computer-aided diagnosis system, the efficiency increased, and the cost was reduced for the cancer diagnosis. Traditional breast cancer classification techniques are based on handcrafted features techniques, and their performance relies upon the chosen features. They also are very sensitive to different sizes and complex shapes. However, histopathological breast cancer images are very complex in shape. Currently, deep learning models have become an alternative solution for diagnosis, and have overcome the drawbacks of classical classification techniques. Although deep learning has performed well in various tasks of computer vision and pattern recognition, it still has some challenges. One of the main challenges is the lack of training data. To address this challenge and optimize the performance, we have utilized a transfer learning technique which is where the deep learning models train on a task, and then fine-tune the models for another task. We have employed transfer learning in two ways: Training our proposed model first on the same domain dataset, then on the target dataset, and training our model on a different domain dataset, then on the target dataset. We have empirically proven that the same domain transfer learning optimized the performance. Our hybrid model of parallel convolutional layers and residual links is utilized to classify hematoxylin–eosin-stained breast biopsy images into four classes: invasive carcinoma, in-situ carcinoma, benign tumor and normal tissue. To reduce the effect of overfitting, we have augmented the images with different image processing techniques. The proposed model achieved state-of-the-art performance, and it outperformed the latest methods by achieving a patch-wise classification accuracy of 90.5%, and an image-wise classification accuracy of 97.4% on the validation set. Moreover, we have achieved an image-wise classification accuracy of 96.1% on the test set of the microscopy ICIAR-2018 dataset.

1 January 2011 in Molecular Autism
Verified
Journal Article
Open access
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KAKristina Aldridge
Kristina Aldridge
IGIan D George
Ian D George
KCKimberly K Cole
Kimberly K Cole
JAJordan R Austin
Jordan R Austin
TTT Nicole Takahashi
T Nicole Takahashi
JMJudith H Miles
Judith H Miles
The brain develops in concert and in coordination with the developing facial tissues, with each influencing the development of the other and sharing genetic signaling pathways. Autism spectrum disorders (ASDs) result from alterations in the embryological brain, suggesting that the development of the faces of children with ASD may result in subtle facial differences compared to typically developing children. In this study, we tested two hypotheses. First, we asked whether children with ASD display a subtle but distinct facial phenotype compared to typically developing children. Second, we sought to determine whether there are subgroups of facial phenotypes within the population of children with ASD that denote biologically discrete subgroups.

8 November 2021 in Electronics
Verified
Journal Article
Open access
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ANAhmed R. Nasser
Ahmed R. Nasser
AHAhmed Mudheher Hasan
Ahmed Mudheher Hasan
AHAmjad Humaidi
Amjad Humaidi
Ahmed AlkhayyatAhmed Alkhayyat
Ahmed Alkhayyat
Laith AlzubaidiLaith Alzubaidi
Laith Alzubaidi
Ye DuanYe Duan
Ye Duan
Diabetes is a chronic disease that can affect human health negatively when the glucose levels in the blood are elevated over the creatin range called hyperglycemia. The current devices for continuous glucose monitoring (CGM) supervise the glucose level in the blood and alert user to the type-1 Diabetes class once a certain critical level is surpassed. This can lead the body of the patient to work at critical levels until the medicine is taken in order to reduce the glucose level, consequently increasing the risk of causing considerable health damages in case of the intake is delayed. To overcome the latter, a new approach based on cutting-edge software and hardware technologies is proposed in this paper. Specifically, an artificial intelligence deep learning (DL) model is proposed to predict glucose levels in 30 min horizons. Moreover, Cloud computing and IoT technologies are considered to implement the prediction model and combine it with the existing wearable CGM model to provide the patients with the prediction of future glucose levels. Among the many DL methods in the state-of-the-art (SoTA) have been considered a cascaded RNN-RBM DL model based on both recurrent neural networks (RNNs) and restricted Boltzmann machines (RBM) due to their superior properties regarding improved prediction accuracy. From the conducted experimental results, it has been shown that the proposed Cloud&DL-based wearable approach achieves an average accuracy value of 15.589 in terms of RMSE, then outperforms similar existing blood glucose prediction methods in the SoTA.