Juan Jaime Sánchez-Escobar

Dr. Juan Jaime Sánchez-Escobar

RED NACIONAL DE SUPERCOMPUTO -MÉXICO
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Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 May 2022 in Genes
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EFElisa Fernandez-Castillo
Elisa Fernandez-Castillo
Liliana Ibeth Barbosa-SantillánLiliana Ibeth Barbosa-Santillán
Liliana Ibeth Barbosa-Santillán
LFLuis Falcon-Morales
Luis Falcon-Morales
Juan Jaime Sánchez-EscobarJuan Jaime Sánchez-Escobar
Juan Jaime Sánchez-Escobar
Many living organisms have DNA in their cells that is responsible for their biological features. DNA is an organic molecule of two complementary strands of four different nucleotides wound up in a double helix. These nucleotides are adenine (A), thymine (T), guanine (G), and cytosine (C). Genes are DNA sequences containing the information to synthesize proteins. The genes of higher eukaryotic organisms contain coding sequences, known as exons and non-coding sequences, known as introns, which are removed on splice sites after the DNA is transcribed into RNA. Genome annotation is the process of identifying the location of coding regions and determining their function. This process is fundamental for understanding gene structure; however, it is time-consuming and expensive when done by biochemical methods. With technological advances, splice site detection can be done computationally. Although various software tools have been developed to predict splice sites, they need to improve accuracy and reduce false-positive rates. The main goal of this research was to generate Deep Splicer, a deep learning model to identify splice sites in the genomes of humans and other species. This model has good performance metrics and a lower false-positive rate than the currently existing tools. Deep Splicer achieved an accuracy between 93.55% and 99.66% on the genetic sequences of different organisms, while Splice2Deep, another splice site detection tool, had an accuracy between 90.52% and 98.08%. Splice2Deep surpassed Deep Splicer on the accuracy obtained after evaluating C. elegans genomic sequences (97.88% vs. 93.62%) and A. thaliana (95.40% vs. 94.93%); however, Deep Splicer’s accuracy was better for H. sapiens (98.94% vs. 97.15%) and D. melanogaster (97.14% vs. 92.30%). The rate of false positives was 0.11% for human genetic sequences and 0.25% for other species’ genetic sequences. Another splice prediction tool, Splice Finder, had between 1% and 3% of false positives for human sequences, while other species’ sequences had around 4% and 10%.

9 March 2021 in Applied Sciences
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Rogelio Bautista-SánchezRogelio Bautista-Sánchez
Rogelio Bautista-Sánchez
Liliana Ibeth Barbosa-SantillánLiliana Ibeth Barbosa-Santillán
Liliana Ibeth Barbosa-Santillán
Juan Jaime Sánchez-EscobarJuan Jaime Sánchez-Escobar
Juan Jaime Sánchez-Escobar
The prediction of vessel maritime navigation has become an exciting topic in the last years, especially considering economics, commercial exchange, and security. In addition, vessel monitoring requires better systems and techniques that help enterprises and governments to protect their interests. Specifically, the prediction of vessel movements is essential for safety and tracking. However, the applications of prediction techniques have a high cost related to computational efficiency and low resource saving. This article presents a sample method to select historical data on vessel-specific routes to optimize the computational performance of the prediction of vessel positions and route estimation in real-time. These historical navigation data can help to estimate a complete path and perform vessel position predictions through time. This Select Best AIS Data in Prediction Vessel Movements and Route Estimation (PreMovEst) method works in a Vessel Traffic Service database to save computational resources when predictions or route estimations are executed. This article discusses AIS data and the artificial neural network. This work aims to present a prediction model that correctly predicts the physical movement in the route. It supports path planning for the Vessel Traffic Service. After testing the method, the results obtained for route estimation have a precision of 76.15%, and those for vessel position predictions through time have an accuracy of 81.043%.

4 September 2024 in Technologies
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Gerardo García-GilGerardo García-Gil
Gerardo García-Gil
GAGabriela del Carmen Lopez- Armas
Gabriela del Carmen Lopez- Armas
Juan Jaime Sánchez-EscobarJuan Jaime Sánchez-Escobar
Juan Jaime Sánchez-Escobar
BSBryan Armando Salazar-Torres
Bryan Armando Salazar-Torres
ARAlma Rodriguez
Alma Rodriguez
Effective communication is crucial in daily life, and for people with hearing disabilities, sign language is no exception, serving as their primary means of interaction. Various technologies, such as cochlear implants and mobile sign language translation applications, have been explored to enhance communication and improve the quality of life of the deaf community. This article presents a new, innovative method that uses real-time machine learning (ML) to accurately identify Mexican sign language (MSL) and is adaptable to any sign language. Our method is based on analyzing six features that represent the angles between the distal phalanges and the palm, thus eliminating the need for complex image processing. Our ML approach achieves accurate sign language identification in real-time, with an accuracy and F1 score of 99%. These results demonstrate that a simple approach can effectively identify sign language. This advance is significant, as it offers an effective and accessible solution to improve communication for people with hearing impairments. Furthermore, the proposed method has the potential to be implemented in mobile applications and other devices to provide practical support to the deaf community.

3 March 2019 in Scientific Programming
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Gabriel Alejandro León-ParedesGabriel Alejandro León-Paredes
Gabriel Alejandro León-Paredes
Liliana Ibeth Barbosa-SantillánLiliana Ibeth Barbosa-Santillán
Liliana Ibeth Barbosa-Santillán
Juan Jaime Sánchez-EscobarJuan Jaime Sánchez-Escobar
Juan Jaime Sánchez-Escobar
APAntonio Pareja-Lora
Antonio Pareja-Lora
Maritime safety and security are being constantly jeopardized. Therefore, identifying maritime flow irregularities (semi-)automatically may be crucial to ensure maritime security in the future. This paper presents a Ship Semantic Information-Based, Image Similarity Calculation System (Ship-SIBISCaS), which constitutes a first step towards the automatic identification of this kind of maritime irregularities. In particular, the main goal of Ship-SIBISCaS is to automatically identify the type of ship depicted in a given image (such as abandoned, cargo, container, hospital, passenger, pirate, submersible, three-decker, or warship) and, thus, classify it accordingly. This classification is achieved in Ship-SIBISCaS by finding out the similarity of the ship image and/or description with other ship images and descriptions included in its knowledge base. This similarity is calculated by means of an LSA algorithm implementation that is run on a parallel architecture consisting of CPUs and GPUs (i.e., a heterogeneous system). This implementation of the LSA algorithm has been trained with a collection of texts, extracted from Wikipedia, that associate some semantic information to ImageNet ship images. Thanks to its parallel architecture, the indexing process of this image retrieval system has been accelerated 10 times (for the 1261 ships included in ImageNet). The range of the precision of the image similarity method is 46% to 92% with 100% recall (that is, a 100% coverage of the database).

21 July 2016 in Applied Optics
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Juan Jaime Sánchez-EscobarJuan Jaime Sánchez-Escobar
Juan Jaime Sánchez-Escobar
Liliana Ibeth Barbosa-SantillánLiliana Ibeth Barbosa-Santillán
Liliana Ibeth Barbosa-Santillán
JVJavier Vargas-Ubera
Javier Vargas-Ubera
FAFélix Aguilar-Valdés
Félix Aguilar-Valdés
A stochastic inverse method is presented based on a hybrid evolutionary optimization algorithm (HEOA) to retrieve a monomodal particle-size distribution (PSD) from the angular distribution of scattered light. By solving an optimization problem, the HEOA (with the Fraunhofer approximation) retrieves the PSD from an intensity pattern generated by Mie theory. The analyzed light-scattering pattern can be attributed to unimodal normal, gamma, or lognormal distribution of spherical particles covering the interval of modal size parameters 46≤α≤150. The HEOA ensures convergence to the near-optimal solution during the optimization of a real-valued objective function by combining the advantages of a multimember evolution strategy and locally weighted linear regression. The numerical results show that our HEOA can be satisfactorily applied to solve the inverse light-scattering problem.

1 September 2015 in Optical Engineering
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Juan Jaime Sánchez-EscobarJuan Jaime Sánchez-Escobar
Juan Jaime Sánchez-Escobar
Liliana Ibeth Barbosa-SantillánLiliana Ibeth Barbosa-Santillán
Liliana Ibeth Barbosa-Santillán
This paper describes the use of a hybrid evolutionary optimization algorithm (HEOA) for computing the wavefront aberration from real interferometric data. By finding the near-optimal solution to an optimization problem, this algorithm calculates the Zernike polynomial expansion coefficients from a Fizeau interferogram, showing the validity for the reconstruction of the wavefront aberration. The proposed HEOA incorporates the advantages of both a multimember evolution strategy and locally weighted linear regression in order to minimize an objective function while avoiding premature convergence to a local minimum. The numerical results demonstrate that our HEOA is robust for analyzing real interferograms degraded by noise. Sánchez-Escobar and Barbosa Santillán: Reconstruction of the wavefront aberration from real interferometric data using a hybrid evolutionary optimization algorithm with Zernike polynomials