Soil bacteria play important roles in biogeochemical cycling and biodiversity in mountain ecosystems. Past studies have investigated the bacterial community composition and diversity in elevation gradations covered by different vegetation types, but for a better assessment of elevation effects, here we studied bacterial communities in soil under identical vegetation cover. High-throughput amplicon sequencing of the V3-V4 region of bacterial 16S rDNA was used to investigate the diversity and composition bacterial communities in soil from 700 to 1,000 m above sea level collected on the north slope of Changbai Mountains, Northeast China. Obviously differences (p < 0.05) in soil physicochemical parameters (i.e., total nitrogen, nitrate and ammonium nitrogen, soil moisture content, available potassium, microbial biomass carbon and nitrogen) were observed at different elevations. Soil bacterial abundance indices (Richness, Chao1, ACE) differed significantly along the elevation gradient, whereas the Shannon index remained unchanged. Principal Coordinates Analysis indicated separated soil bacterial communities of the different elevations. The dominant phyla in all soil samples were Proteobacteria, Acidobacteria, Actinobacteria, Verrucomicrobia, and Bacteroidetes, which in combination reached 80%–85%. Soil pH to some extend related to soil bacterial community along altitude gradations. The relative abundance of a multiple phyla was negatively affected by the soil nutrients, such as ammonium and nitrate nitrogen, available potassium, soil moisture content, available phosphorus, microbial biomass nitrogen and soil organic C. The strongest effects were seen for Proteobacteria. The pH either positively or negatively correlated with specific genera. The soil bacterial function differed significantly among four elevations. The chemoheterotrophy, aerobic chemoheterotrophy and nitrification were the most dominant functions of soil bacteria among four elevations. Overall, the changes in soil physicochemical properties with elevation are important in shaping the bacterial diversity, composition and function in soil with the same above-ground vegetation of Changbai Mountains.

Excessive application of phosphorus (P) fertilizers does not alleviate P deficiency in soils and may cause water eutrophication. The available P in acidic soils is bound to minerals, such as iron and aluminum, in forms that are difficult to utilize by plants. The low availability of P is detrimental to soil health and crop growth. To address the P imbalance in the soil, different bioremediation techniques, such as phosphate-solubilizing bacteria (PSB) application, have been employed. However, the systematic analysis of the effects of composite inoculation of PSB on crops remains elusive. In this study, the effects of composite-inoculated PSB on plant growth were systematically evaluated by two scales: plate experiment and soil test. This study employed six different strains of PSB including Lelliottia amnigena 1-1 (A), Kluyvera intermedia 1-2 (B), Pseudomonas tolaasii 1-6 (C), Burkholderia cepacia 2-5 (D), Pseudomonas frederiksbergensis 2-11 (E), and Pseudomonas rhodesiae 2-47 (F). Among the 57 different combinations of these strains, four combinations (AE, AF, ADF, and AEF) indicated higher phosphate-solubilizing abilities than the single strains. These combinations were used for subsequent experiments. The plate experiment revealed that composite strains were more effective than single strains in promoting the growth and development of seedlings and roots of oilseed rape. Furthermore, AE, AF, and AEF combinations indicated excellent growth-promoting effects. Moreover, the soil test revealed that the composite inoculation of AE and AEF significantly enhanced biomass accumulation and root development in oilseed rape. The increased growth-promoting effects of the composite strains were observed to be associated with to their phosphate-solubilizing capacities. Both scales confirmed that compared to single inoculation, composite inoculation of PSB is more beneficial for plant growth. This study provides composite inoculation materials and foundational data to support the bioremediation of P imbalance in soil.

Inter-organismal metabolites play important roles in regulating organism behavior and the communication between organisms. Nematodes, the most abundant animals on earth, are crucial participants in soil ecosystems through their interactions with microbes. For example, bacterial-feeding nematodes increase the activity of indole-3-acetic acid (IAA)-producing bacteria and the IAA content in soil. However, the way in which these nematodes interact with bacteria and affect IAA biosynthesis is not well understood. Here, using the model nematode Caenorhabditis elegans and the plant-beneficial bacterium Arthrobacter pascens ZZ21, we examined the effects of nematode excretions or extracts on bacterial IAA biosynthesis. To explore the underlying regulatory mechanism in more detail, we performed transcriptome sequencing and metabolomic analysis. Our findings suggest that C. elegans extracts promote IAA biosynthesis in A. pascens ZZ21 by increasing the expression of genes and the abundance of intermediates involved in the indole-3-pyruvic acid (IPyA) pathway. C. elegans extracts also significantly influenced biosynthetic and metabolic activity in A. pascens ZZ21. Treatment with C. elegans extracts promoted pyruvate metabolism, the citrate cycle (TCA) cycle and the production of some TCA-cycle-related amino acids and inhibited oxidative phosphorylation, which induced the accumulation of reduced nicotinamide adenine dinucleotide (NADH). We propose that the extracts altered the metabolism of A. pascens ZZ21 to help the bacteria resist stress caused by their predator. Our findings indicate that bacterial-feeding nematodes mediate the interaction between nematodes and bacteria via their extracts, providing insights into the ecological function of C. elegans in soil.

Plasmids are mostly found in bacteria as extrachromosomal genetic elements and are widely used in genetic engineering. Exploring the mechanisms of plasmid–host interaction can provide crucial information for the application of plasmids in genetic engineering. However, many studies have generally focused on the influence of plasmids on their bacterial hosts, and the effects of plasmids on bacteria-feeding animals have not been explored in detail. Here, we use a “plasmid–bacteria–Caenorhabditis elegans” model to explore the impact of plasmids on their host bacteria and bacterivorous nematodes. First, the phenotypic responses of C. elegans were observed by feeding Escherichia coli OP50 harboring different types of plasmids. We found that E. coli OP50 harboring plasmid pEX18Gm unexpectedly increases the fecundity of C. elegans. Subsequently, we found that the plasmid pEX18Gm indirectly affects C. elegans fecundity via bacterial metabolism. To explore the underlying regulatory mechanism, we performed bacterial RNA sequencing and performed in-depth analysis. We demonstrated that the plasmid pEX18Gm upregulates the transcription of methionine synthase gene metH in the bacteria, which results in an increase in methionine that supports C. elegans fecundity. Additionally, we found that a pEX18Gm-induced increase in C. elegans can occur in different bacterial species. Our findings highlight the plasmid–bacteria–C. elegans model to reveal the mechanism of plasmids’ effects on their host and provide a new pattern for systematically studying the interaction between plasmids and multi-species.

Members of the CCT gene family have been shown to play roles in photoperiodic flowering and environmental adaptation under a range of conditions. In this study, 29 CCT genes from watermelon were categorized into three distinct subfamilies. The ClCCT genes were systematically analyzed, focusing on their physicochemical properties, gene duplication, motifs, structural divergence, promoter regions, and collinearity with genes from other species. The responsiveness of these genes to abiotic stressors, hormone treatments, and photoperiod prolongation was also examined. Segmental duplication (gene amplification) significantly influenced the evolution of these genes, with most ClCCT genes containing light-, hormone-, and/or abiotic stimulus-responsive elements. In response to abiotic and hormonal stresses, 5 genes responded to cold, 1 gene to drought, and 4 genes to salt. 6 genes were responsive to ABA, and 13 genes to MeJA. Strikingly, ClCCT17, ClCCT4, and ClCCT28 responded to multiple stressors. A majority of these ClCCT genes and their homologs in other species were responsive to prolonged daylight exposure. The varying expression patterns of these genes suggested a key role for watermelon CCT genes in the regulation of both abiotic stress responses and flowering. Functional diversity was also evident among CCT family genes within a given species as well as among species attributable to changes in the structural features and expression patterns of the genes and the encoded proteins.