Garbiñe Olabarría

Dr. Garbiñe Olabarría

Department of Biotechnology, GAIKER Technology Centre, Basque Research and Technology Alliance, 48173 Zamudio, Spain
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Research Focus & Metrics

Academic Career Length

34Years (1993-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 March 2009 in Lab on a Chip
Verified
Journal Article
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JRJesus M. Ruano-López
Jesus M. Ruano-López
MAMaria Agirregabiria
Maria Agirregabiria
Garbiñe OlabarríaGarbiñe Olabarría
Garbiñe Olabarría
DVDolores Verdoy
Dolores Verdoy
DBDang Duong Bang
Dang Duong Bang
JBJavier Berganzo
Javier Berganzo
This paper describes how sixteen partners from eight different countries across Europe are working together in two EU projects focused on the development of a point of care system. This system uses disposable Lab on a Chips (LOCs) that carry out the complete assay from sample preparation to result interpretation of raw samples. The LOC is either embedded in a flexible motherboard with the form of a smartcard (Labcard) or in a Skinpatch. The first project, OPTOLABCARD, extended and tested the use of a thick photoresit (SU-8) as a structural material to manufacture LOCs by lamination. This project produced several examples where SU-8 microfluidic circuitry revealed itself as a viable material for several applications, such as the integration on chip of a Polymerase Chain Reaction (PCR) that includes sample concentration, PCR amplification and optical detection ofSalmonella spp. using clinical samples. The ongoing project, LABONFOIL, is using two results of OPTOLABCARD: the sample concentration method and the capability to fabricate flexible and ultra thin LOCs based on sheets instead of wafers. This rupture from the limited and expensive wafer surface heritage allows the development of a platform where LOCs are big enough to include all the sample preparation subcomponents at a low price. These LOCs will be used in four point of care applications: environment, food, cancer and drug monitoring. The user will obtain the results of the tests by connecting the Labcard/Skinpatch reader to a very popular interface (a smartphone), creating a new instrument namely “The SmartBioPhone™”. All standard smartphone capabilities will be at the disposal of the point of care instrument by a simple click. In order to guarantee the future mass production of these LOCs, the project will develop a large dry film equipment where LOCs will be fabricated at a low cost.

1 February 2012 in Biosensors and Bioelectronics
Verified
Journal Article
Closed access
DVDolores Verdoy
Dolores Verdoy
ZBZiortza Barrenetxea
Ziortza Barrenetxea
JBJavier Berganzo
Javier Berganzo
MAMaria Agirregabiria
Maria Agirregabiria
JRJesús M. Ruano-López
Jesús M. Ruano-López
Garbiñe OlabarríaGarbiñe Olabarría
Garbiñe Olabarría

1 October 1995 in Journal of Bacteriology
Verified
Journal Article
Open access
PDF file
LFL A Fernández-Herrero
L A Fernández-Herrero
Garbiñe OlabarríaGarbiñe Olabarría
Garbiñe Olabarría
JCJose Caston
Jose Caston
ILIñigo Lasa
Iñigo Lasa
JBJosé Berenguer
José Berenguer
The S-layers of Thermus thermophilus HB27 and T. thermophilus HB8 are composed of protein units of 95 kDa (P95) and 100 kDa (P100), respectively. We have selected S-layer deletion mutants from both strains by complete replacement of the slpA gene. Mutants of the two strains showed similar defects in growth and morphology and overproduced an external cell envelope inside of which cells remained after division. However, the nature of this external layer is strain specific, being easily stained and regular in the HB8 delta slpA derivative and amorphous and poorly stained in the HB27 delta slpA strain. The addition of chromosomic DNA from T. thermophilus HB8 to growing cultures of T. thermophilus HB27 delta slpA led to the selection of a new strain, HB27C8, which expressed a functional S-layer composed of the P100 protein. Conversely, the addition of chromosomic DNA from T. thermophilus HB27 to growing cultures of T. thermophilus HB8 delta slpA allowed the isolation of strain HB8C27, which expressed a functional S-layer composed of the P95 protein. The driving force which selected the transference of the S-layer genes in these experiments was the difference in growth rates, one of the main factors leading to selection in natural environments.

1 April 2007 in Biosensors and Bioelectronics
Verified
Journal Article
Closed access
JBJ. Berganza
J. Berganza
Garbiñe OlabarríaGarbiñe Olabarría
Garbiñe Olabarría
RGRaquel Garcia
Raquel Garcia
DVD. Verdoy
D. Verdoy
ARA. Rebollo
A. Rebollo
SAS. Arana
S. Arana


26 December 2022 in Heliyon
Verified
Journal Article
Open access
AMAne Rivas Macho
Ane Rivas Macho
UEUnai Eletxigerra
Unai Eletxigerra
RDRuth Diez-Ahedo
Ruth Diez-Ahedo
SMSantos Merino
Santos Merino
ASAntton Sanjuan
Antton Sanjuan
Garbiñe OlabarríaGarbiñe Olabarría
Garbiñe Olabarría
The aim of this work is the design and 3D printing of a new electrochemical sensor for the detection of Listeria monocytogenes based on loop mediated isothermal amplification (LAMP). The food related diseases involve a serious health issue all over the world. Listeria monocytogenes is one of the major problems of contaminated food, this pathogen causes a disease called listeriosis with a high rate of hospitalization and mortality. Having a fast, sensitive and specific detection method for food quality control is a must in the food industry to avoid the presence of this pathogen in the food chain (raw materials, facilities and products). A point-of-care biosensor based in LAMP and electrochemical detection is one of the best options to detect the bacteria on site and in a very short period of time. With the numerical analysis of different geometries and flow rates during sample injection in order to avoid bubbles, an optimized design of the microfluidic biosensor chamber was selected for 3D-printing and experimental analysis. For the electrochemical detection, a novel custom gold concentric-3-electrode consisting in a working electrode, reference electrode and a counter electrode was designed and placed in the bottom of the chamber. The LAMP reaction was optimized specifically for a primers set with a limit of detection of 1.25 pg of genomic DNA per reaction and 100% specific for detecting all 12 Listeria monocytogenes serotypes and no other Listeria species or food-related bacteria. The methylene blue redox-active molecule was tested as the electrochemical transducer and shown to be compatible with the LAMP reaction and very clearly distinguished negative from positive food samples when the reaction is measured at the end-point inside the biosensor.