Halil Bayraktar

Dr. Halil Bayraktar

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2020 in International Journal of Biological Macromolecules
Verified
Journal Article
Closed access
OAOzge Begum Akalin
Ozge Begum Akalin
HBHalil Bayraktar
Halil Bayraktar

22 July 2025 in Measurement Science and Technology
Verified
Journal Article
Open access
BPBartosz Pruchnik
Bartosz Pruchnik
KKKrzysztof Kwoka
Krzysztof Kwoka
TPTomasz Piasecki
Tomasz Piasecki
MGMasoud Jedari Ghourichaei
Masoud Jedari Ghourichaei
UKUmut Kerimzade
Umut Kerimzade
TGTeodor Gotszalk
Teodor Gotszalk
In this study, we describe a process of characterization of a 3-axial force sensor with piezoresistive silicon nanowires. We present a unique method for determining the gauge factor (GF) of a volumetric structure with a stiffness exceeding 105N m−1 and resonant frequencies above 10 MHz. We employed an uncommon Lab-in-Scanning Electron Microscope (Lab-in-SEM, LIS) approach to perform a full characterization schedule under vacuum conditions using direct actuation with nanomanipulators. We discuss the force evaluation errors arising from the sample support stiffness. Finally, we present the results of GF measurements of the multi-axially investigated device with GF of over 20 for axial and over 40 for transverse loading.

13 October 2022 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
MQMohammad Haroon Qureshi
Mohammad Haroon Qureshi
NONurhan Ozlu
Nurhan Ozlu
HBHalil Bayraktar
Halil Bayraktar

18 September 2023 in Biosensors
Verified
Journal Article
Open access
PDF file
MGMehmet Yunus Genceroglu
Mehmet Yunus Genceroglu
CCCansu Cavdar
Cansu Cavdar
SMSelen Manioglu
Selen Manioglu
HBHalil Bayraktar
Halil Bayraktar
Cytochrome c (Cytc) is a key redox protein for energy metabolism and apoptosis in cells. The activation of Cytc is composed of several steps, including its transfer to the mitochondrial membrane, binding to cytochrome c heme lyase (CCHL) and covalent attachment to heme. The spectroscopic methods are often applied to study the structural changes of Cytc. However, they require the isolation of Cytc from cells and have limited availability under physiological conditions. Despite recent studies to elucidate the tightly regulated folding mechanism of Cytc, the role of these events and their association with different conformational states remain elusive. Here, we provide a genetically encoded fluorescence method that allows monitoring of the conformational changes of Cytc upon binding to heme and CCHL. Cerulean and Venus fluorescent proteins attached at the N and C terminals of Cytc can be used to determine its unfolded, intermediate, and native states by measuring FRET amplitude. We found that the noncovalent interaction of heme in the absence of CCHL induced a shift in the FRET signal, indicating the formation of a partially folded state. The higher concentration of heme and coexpression of CCHL gave rise to the recovery of Cytc native structure. We also found that Cytc was weakly associated with CCHL in the absence of heme. As a result, a FRET-based fluorescence approach was demonstrated to elucidate the mechanism of heme-induced Cytc conformational changes with spatiotemporal resolution and can be applied to study its interaction with small molecules and other protein partners in living cells.