To date, only a few microbial community studies of cold seeps at the South China Sea (SCS) have been reported. The cold seep dominated by tubeworms was discovered at South Yungan East Ridge (SYER) offshore southwestern Taiwan by miniROV. The tubeworms were identified and proposed as Paraescarpia formosa sp. nov. through morphological and phylogenetic analyses. The endosymbionts in the trunk of P. formosa analyzed by a 16S rRNA gene clone library represented only one phylotype, which belonged to the family Sedimenticolaceae in Gammaproteobacteria. In addition, the archaeal and bacterial communities in the habitat of tubeworm P. formosa were investigated by using high-phylogenetic-resolution full-length 16S rRNA gene amplicon sequencing. The results showed that anerobic methane-oxidizing archaea (ANME)-1b was most abundant and ANME-2ab was minor in a consortia of the anerobic oxidation of methane (AOM). The known sulfate-reducing bacteria (SRB) partners in AOM consortia, such as SEEP-SRB1, -SRB2, and -SRB4, Desulfococcus and Desulfobulbus, occurred in a small population (0–5.7%) at the SYER cold seep, and it was suggested that ANME-1b and ANME-2ab might be coupled with multiple SRB in AOM consortia. Besides AOM consortia, various methanogenic archaea, including Bathyarchaeota (Subgroup-8), Methanocellales, Methanomicrobiales, Methanosarcinales, Methanofastidiosales and Methanomassiliicoccales, were identified, and sulfur-oxidizing bacteria Sulfurovum and Sulfurimonas in phylum Epsilonbacteraeota were dominant. This study revealed the first investigation of microbiota in and around tubeworm P. formosa discovered at the SYER cold seep offshore southwestern Taiwan. We could gain insights into the chemosynthetic communities in the deep sea, especially regarding the cold seep ecosystems at the SCS.

Here, we report the complete genome sequence of Oscillospiraceae bacterium MB08-C2-2 (=BCRC 81394), isolated from feces of black soldier fly ( Hermetia illucens ) larvae, comprising 3,292,498 bp, a GC content of 49.67%, and identification of a 72,574 bp plasmid for further species delineation and comparative genomic analysis.

Acid rain is a severe global environmental issue, and clarifying its impacts on litter decomposition and underlying mechanisms is critical for accurately forecasting future climate change. Litter consists of components (e.g., non-structural carbohydrates, lignin, cellulose, and hemicellulose) with distinct decomposition resistance, but how acid rain affects these components to modulate overall litter decomposition across different decomposition stages remains unclear. Therefore, a microcosm experiment was conducted to determine decomposition rates of Chinese fir (Cunninghamia lanceolata) litter and its components based on litter mass loss under different simulated acid rain intensities (pH 4.5, moderate acid rain, MA; pH 3.0, severe acid rain, SA; and pH ≈ 7.0, tap water, CK) over two decomposition stages (0–5 months: initial decomposition stage; 6–16 months: late decomposition stage). Meanwhile, to analyze the factors influencing the litter decomposition rate, soil samples were collected at 5 and 16 months of decomposition for soil property analysis. Results showed that MA had no significant effect on litter decomposition in either stage. Conversely, SA led to a significant 43.7% increase in the litter decomposition rate in the initial decomposition stage, driven by its acid dissolution effect that accelerated the decomposition of cellulose and hemicellulose. However, SA significantly decreased the decomposition rate by 42.0% in the late decomposition stage by inhibiting the decomposition of lignin, cellulose, and hemicellulose, which was due to the reduced activities of soil peroxidase and xylosidase under soil acidification. Notably, neither MA nor SA significantly affected the litter decomposition rate over the entire decomposition period (0–16 months). This study indicates that acid rain’s effect on litter decomposition depends on its intensity and decomposition stage, emphasizing the necessity of distinguishing litter components and decomposition stages to explore its underlying mechanisms and precisely predict global climate change.

A microbial community study using a culture-dependent method was conducted on dehydrated sludge collected from a steel factory’s wastewater treatment plant. One isolate, designated QWL-01^T, was a strictly anaerobic, Gram-stain-negative, non-motile, non-spore-forming bacterium with coccoid cells measuring 0.6–0.9 μm in diameter. The growth of strain QWL-01^T was observed at 4–40 °C (optimum at 28–35 °C), pH 5.5–8.0 (optimum at pH 7.1), and a range of 0–3% NaCl (optimum at 0.5%). An analysis of the Biolog AN plate revealed positive carbon source utilization only for palatinose, α-ketovaleric acid, and pyruvic acid. The predominant fatty acids were iso-C_13:0 (17.0%), C_16:0 dimethyl acetal (12.0%), and anteiso-C_13:0 (9.2%). A 16S rRNA gene sequence analysis through BLASTN demonstrated that the nearest phylogenetic neighbors of the novel strain were Youngiibacter multivorans DSM 6139^T (93.82%) and Proteiniclasticum ruminis JCM 14817^T (93.75%). The genome size of strain QWL-01^T was 3.69 Mbp, with a G+C content of 50.8 mol%. Comparing strain QWL-01^T with closely related species of genera Proteiniclasticum and Youngiibacter, the digital DNA-DNA hybridization (dDDH), average nucleotide identity (ANI), and average amino acid identity (AAI) values ranged from 26.60% to 36.80%, 65.89% to 68.30%, and 49.27% to 51.58%, respectively. Based on phenotypic, physiological, phylogenetic, and genomic relatedness evidence, strain QWL-01^T represents a novel genus in the family Clostridiaceae, for which the name Anaerococcoides asporogena gen. nov. sp. nov. is proposed. Strain QWL-01^T (=BCRC 81396^T = CICC 25258^T = NBRC 117088^T) is the type strain of the proposed novel species.