The meagre Argyrosomus regius, one of the largest sciaenidae in the world, is a valuable resource for fisheries and aquaculture. Despite its socioeconomic relevance, knowledge about population dynamics and wild stocks is still scarce, and conservation risks are associated with overexploitation. Two genetic distinct groups, one in the North Atlantic Ocean and one in the eastern Mediterranean Sea, were identified by previous studies. However, little is known about the genetic structure of the Atlantic group, where four important spawning areas have been identified. To assess if each spawning area is an independent breeding unit, the genetic diversity, populational structure, and demographic history of A. regius along the North–East and Eastern Central Atlantic coast were analyzed, using 15 microsatellite loci. Results corroborate the hypothesis tested, suggesting four genetic groups: a first group encompassing individuals from the Gironde spawning area, a second group encompassing individuals from the Tagus spawning area, a third group corresponding to individuals captured in the Algarve region, and a forth group gathering individuals from Morocco and Mauritania. This study reveals the need for specific fisheries management plans considering genetic structure information, and highlights the need for international cooperation.

Atlantic salmon (Salmo salar L.) are an emblematic anadromous fish species that inhabit marine and freshwater ecosystems in the Northern Hemisphere. In Portugal, the southern limit of its global distribution range, the species is classified as Critically Endangered (CR), and occurs only in the Minho and Lima rivers, which hold the most abundant populations, with occasional confirmed occurrences in the Cávado and Douro rivers. In this region, the species faces several highly detrimental threats (e.g., dams and other obstacles, unsuitable fishing legislation, and climate change), but some knowledge gaps about the biology, ecology, and structure of these southern populations often impair any attempt to define and implement effective management and conservation programs. We present the objectives, actions, and preliminary results of a set of projects and partnerships, recently implemented in Portugal, focused on increasing knowledge about local salmon populations to contribute to the development of suitable management guidelines for the target species. Within the project “SALMONLINK—Contribution of scientists and fishermen to the conservation and participatory management of Atlantic salmon populations in Portugal”, several actions have been implemented for the past three years to improve knowledge about this species, including the assessment of salmon distribution and abundance, adult and juvenile migration patterns, and population structure. In complement to these measures, we are also implementing (in Portugal) the international projects “SMOLTrack III & IV—Quantifying smolt survival from source to sea: informing management strategies to optimize returns”, which are specifically focused on smolt seaward migration and aim to obtain more information on this particularly vulnerable life-stage. Combined with a strong link with the local commercial and recreational fishing communities, who are providing data on salmon catches and contributing to an overview of the socioeconomic value of salmon in Portugal, these projects will contribute to increasing the knowledge of these populations, and at the same time, within the context of the constant transfer of knowledge between all the involved parties, advise the adaptation of the current fishing legislation to the conservation and management requirements of this highly endangered species.

The brown trout (Salmo trutta L.) is one of the most iconic native species from European river ecosystems and is also one of the main species of interest for recreational fishing activities (e.g., fly fishing). This species has a significant potential to attract anglers and related investment to the main fishing grounds, which are usually located in poorly developed areas and away from main city centers. Due to its environmental and socioeconomic value, this species is often targeted by management programs directed to the protection and sustainable exploitation of this valuable natural resource. One of the most common actions to enhance the abundance and condition of trout populations is the restocking of wild populations with fish from aquaculture facilities. However, most fish come from fishfarms using production methods such as high densities in the tanks, use of commercial food and standardized feeding methods, lack of environmental stimulus, and domestication of breeding stocks, which usually results in poor fitness and very low survival rates after release. This consequently leads to reduced success of these management actions. To contribute to solving these problems and enhancing the success of restocking actions for the recovery and sustainable enhancement of wild trout populations, we propose a novel approach to the production of this species, by testing and implementing a new protocol that aims to produce wild-reared trout. These fish come from wild breeders and will be produced with the least human contact in conditions that mimic their natural habitat. Taking advantage of a recently remodeled and re-equipped aquaculture facility, located in Central Portugal (Posto Aquícola de Campelo, Figueiró dos Vinhos), we are rearing trout in low densities (10–20 trout/m³), like the ones observed in natural habitats, using live food (larvae and insects), and subjected to environmental stimuli such as refuges, and water and flow variability, equivalent to those observed in local streams. Accompanied by a pre- and post-restocking monitoring program (e.g., evaluation of trout abundances and habitat in the target stream, dispersion and movement patterns and survival), this study will contribute to enhancing the success of future restocking actions, promoting the sustainable enhancement of wild trout populations, and, thus, increasing the interest of restocked fishing grounds for angling activities and associated incomes.

The meagre is among the largest Sciaenidae in the world (max: 230 cm, 103 kg), with a wide distribution range encompassing the NE and CE Atlantic Ocean and the Mediterranean Sea. The life cycle in Atlantic waters includes migratory movements from feeding and overwintering areas at sea to spawning and nursery areas in estuaries and coastal waters. However, significant spawning aggregations are only observed in five locations, among which is the Tagus estuary (Portugal). The meagre fishery that takes place within the Tagus estuary is significant, accounting for approximately two-thirds of Portuguese meagre catches. Despite its economic relevance, the meagre movements in that region remain largely unknown. The existence of a target fishery inside the estuary alongside a lack of routine biological data collection targeting the species and incipient fisheries control in the area, highlight an urgency to adopt innovative methodologies to unravel meagre migrations and its use of critical areas. We present the first insights of movement patterns and habitat use in the Tagus estuary using acoustic biotelemetry data collected between 2019 and 2021. The acoustic receiver array obtained a total of 142.183 registers from a total of 34 individuals tagged. From the tagged specimens, 33% revisited the Tagus estuary in subsequent years at least once, during the spring and summer, and 49% remained in the Tagus at least until autumn. Further analysis was conducted with juveniles tracked over 3 years to identify critical nursery areas using dynamic Brownian bridge movement models (utilization distribution estimations). The effects of abiotic conditions on the meagre behaviour were assessed using in situ sensor data (e.g., temperature and salinity) and other environmental predictors (e.g., photoperiod and tide cycle) and an explanatory model was developed that helps to understand the use of the Tagus estuary by juveniles. The information collected will be discussed in light of possible applications to promote sustainable management of meagre fisheries in the Tagus estuary and adjacent coastal areas.

The Iberian barbel (Luciobarbus bocagei Steindachner, 1864) and the Iberian nase (Pseudochondrostoma polylepis Steindachner, 1864) are two potamodromous species that migrate upstream in freshwater environments to reproduce. Thus, river fragmentation is a major threat to these species, and fish passes are one of the most-used mitigation measures to restore the longitudinal connectivity of impounded rivers, enabling these species to reach upstream spawning sites. Since 2013, the fish pass installed in the Coimbra dam (Mondego River) has been equipped with a video-recording system to continuously monitor fish passage. Based on visual count data between 2013 to 2015, a total of 61,965 movements of Iberian barbel (up- and downstream) and a total of 138,207 movements of Iberian nase (up- and downstream) were registered, with the migratory upstream movements of nase occurring over a wider period (i.e., January to December) relative to what is described in the literature. The analysis conducted to evaluate the temporal variability in the size of fish using the fish pass showed significant differences between the studied months for both species in both migratory directions; upstream-moving barbel showed a bigger body length in May, and nase showed bigger body lengths in the months of May, June and November. Boosted Regression Trees were used to identify the environmental variables that triggered these movements, with water temperature and flow being, overall, two of the most important variables for both species in both migratory directions. This study updates the relatively scarce available information concerning these species migrations, including movement activity and the associated peaks, size-structure characterization during the migratory periods, and the identification of environmental variables that seem to trigger Iberian barbel and nase movements.

The European river (Lampetra fluviatilis Linnaeus, 1758) and brook (Lampetra planeri Bloch, 1784) lampreys are considered ‘paired species’, i.e., they are closely related and morphologically very similar but have distinct modes of adult life (anadromous vs. resident). In the Iberian Peninsula, the southern limit of both species’ distribution, they face different pressures (e.g., barriers, pollution, hydrological stress) that reduce the available habitat, which is exacerbated by the actual climate change context. The main objective of the present study was to evaluate meso- and microhabitat preferences of Lampetra sp. On the mesohabitat scale, the environmental variables that influence these species’ distributions on the watershed scale were identified. On the microhabitat level, besides identifying the fine-scale variables that influence the presence and abundance of Lampetra sp., possible changes in habitat preferences throughout the larval stage (i.e., distinct size/age classes) were also assessed. Mesohabitat results suggest that the relative abundance of Lampetra sp. is related to variables such as pH and riparian vegetation. Regarding the microhabitat, the relative abundance of the size classes’ distribution seems to be associated with variables such as substrate granulometry. The results in terms of habitat preferences on a Mediterranean basin are discussed in the context of a climate change scenario (e.g., decrease in habitat quality and availability) and management and conservation perspective.