Photoplethysmography (PPG) is widely used in wearable devices due to its conveniency and cost-effective nature. From this signal, several biomarkers can be collected, such as heart and respiration rate. For the usual acquisition scenarios, PPG is an artefact-ridden signal, which mandates the need for the designated classification algorithms to be able to reduce the noise component effect on the classification. Within the selected classification algorithm, the hyperparameters’ adjustment is of utmost importance. This study aimed to develop a deep learning model for robust PPG wave detection, which includes finding each beat’s temporal limits, from which the peak can be determined. A study database consisting of 1100 records was created from experimental PPG measurements performed in 47 participants. Different deep learning models were implemented to classify the PPG: Long Short-Term Memory (LSTM), Bidirectional LSTM, and Convolutional Neural Network (CNN). The Bidirectional LSTM and the CNN-LSTM were investigated, using the PPG Synchrosqueezed Fourier Transform (SSFT) as the models’ input. Accuracy, precision, recall, and F1-score were evaluated for all models. The CNN-LSTM algorithm, with an SSFT input, was the best performing model with accuracy, precision, and recall of 0.894, 0.923, and 0.914, respectively. This model has shown to be competent in PPG detection and delineation tasks, under noise-corrupted signals, which justifies the use of this innovative approach.