Nitrogen is an essential nutrient for plant growth and basic metabolic processes. Root systems play an important role in the ability of plants to obtain nutrients from the soil, and are closely related to the growth and development of above-ground plants. Root morphology analysis showed that root growth was induced under low-nitrogen conditions and inhibited under high-nitrogen conditions. To better understand the molecular mechanisms and metabolic basis underlying the rice root response to nitrogen availability, an integrated analysis of the rice root transcriptome and metabolome under three environmental conditions (low-, control, and high-nitrogen conditions) was conducted. A total of 262 and 262 differentially level metabolites were identified under low- and high-nitrogen conditions, respectively. A total of 696 and 808 differentially expressed genes were identified under low- and high-nitrogen conditions, respectively. For both the differentially expressed genes and metabolites, KEGG pathway analysis indicated that amino acid metabolism, carbon and nitrogen metabolism, phenylpropanoid metabolism, and phytohormones’ signal transduction were significantly affected by nitrogen availability. Additionally, variable levels of 65 transcription factors (TFs) were identified in rice leaves exposed to high and low nitrogen, covering 22 TF families. These results also indicate that there is a significant difference in the transcriptional regulation mechanisms of rice roots between low and high nitrogen. In summary, our study provides new information for a further understanding of the response of rice roots to low-nitrogen and high-nitrogen conditions.

An understanding of the leaf and root traits associated with high nitrogen (N) absorption and utilization is very important in the development of N-efficient varieties in crop breeding programs. However, in rice, the relations between these traits and nitrogen use efficiencies (NUEs) have yet to be identified. Therefore, the responses of leaf and root traits and yields of the three main japonica rice cultivars in northern China were examined at a range of N application rates. The rice cultivars, Shennong 265 (SN265), Tiejing 11 (TJ11), and Fengjing (FJ), were grown in the field at six N rates (0, 60, 120, 180, 240, and 300 kg ha⁻¹) applied during two growing seasons (2018 and 2019). With the increase in N rate, the grain yield of SN265 and TJ11 increased, whereas the grain yield of FJ first increased and then decreased. The grain yield of FJ was higher than that of SN265 and TJ11 at lower N rates, whereas the grain yields of SN265 and TJ11 were higher than that of FJ at higher N rates. The NUEs decreased with the increase in N rates. At lower N rates, the ability of rice to obtain N was the main limitation on rice yield, but with the increase in N rates, the limitation on yield due to N absorption capacity gradually weakened. However, at higher N rates, rice yields were restricted by the ability to utilize N. Compared with TJ11 or FJ, SN265 had higher N utilization capacity primarily because of its higher Rubisco activity, NR activity, GS activity, and ROA. Compared with SN265 or TJ11, FJ had a higher N absorption capacity that was attributed to its larger root architecture, which might have also been one of the reasons for lower N utilization. Therefore, by improving N absorption and utilization-related leaf and root traits, high yields and NUEs can be achieved in rice production at different N application rates.

Light, simple, and high-efficiency fertilization is currently an effective method used to improve quality and increase yield. Most research has only focused on the yield or quality of rice, and no effective or in-depth studies exist on the key stage of panicle, which is essential for these two aspects. This study aimed to determine the effect of applying Nitrogen (N) and Potassium (K) fertilizers on the yield and quality at different leaf ages. The rice cultivar, Shennong 265, was grown in the field-tube condition at the 5-leaf age with K fertilizer at different panicle stages. Five K fertilizer and four N fertilizer levels were applied simultaneously during two growing seasons in 2020–2021. The application of K fertilizer at different panicle stages significantly affected the yield and quality. The application of K and N fertilizers at the 12th-leaf-age increased the number of panicles and grains per panicle, thereby increasing the yield with an average increase of 23.20% over local farmer’s fertilization model (CK) in two years. Application at the 10th-leaf age reduced the starch and protein content of the rice and improved the nutritional quality and taste, with an average increase of 11.08 points compared to CK in two years. The processing quality was the best at the panicle K fertilizer application rate of 47.81–64.69 kg ha⁻¹, and the starch and protein contents were the lowest at the panicle K fertilizer application rate of 56.25 kg ha⁻¹. Under different panicle K fertilizer application rates, N fertilizers had great differences in processing quality but had slight differences in nutritional quality; that is, the starch and protein content (total protein and four protein components) significantly increased. The application of panicle N fertilizer mainly affected starch pasting viscosity (RVA profile characteristics). When panicle K fertilizer was applied after panicle N fertilizer, the yield and quality showed a trend of synergistic improvement. Although this improvement was a low-level synergy, it can still be a direction used to explore the synergistic improvement of output and quality.