Nitrogen is an essential nutrient for plant growth and basic metabolic processes. Root systems play an important role in the ability of plants to obtain nutrients from the soil, and are closely related to the growth and development of above-ground plants. Root morphology analysis showed that root growth was induced under low-nitrogen conditions and inhibited under high-nitrogen conditions. To better understand the molecular mechanisms and metabolic basis underlying the rice root response to nitrogen availability, an integrated analysis of the rice root transcriptome and metabolome under three environmental conditions (low-, control, and high-nitrogen conditions) was conducted. A total of 262 and 262 differentially level metabolites were identified under low- and high-nitrogen conditions, respectively. A total of 696 and 808 differentially expressed genes were identified under low- and high-nitrogen conditions, respectively. For both the differentially expressed genes and metabolites, KEGG pathway analysis indicated that amino acid metabolism, carbon and nitrogen metabolism, phenylpropanoid metabolism, and phytohormones’ signal transduction were significantly affected by nitrogen availability. Additionally, variable levels of 65 transcription factors (TFs) were identified in rice leaves exposed to high and low nitrogen, covering 22 TF families. These results also indicate that there is a significant difference in the transcriptional regulation mechanisms of rice roots between low and high nitrogen. In summary, our study provides new information for a further understanding of the response of rice roots to low-nitrogen and high-nitrogen conditions.

Although nitrogen (N), phosphorus (P), and potassium (K) co-application improves crop growth, yield, and N use efficiency (NUE) of rice, few studies have investigated the mechanisms underlying these interactions. To investigate root morphological and physiological characteristics and determine yield and nitrogen use parameters, rhizo-box experiments were performed on rice using six treatments (no fertilizer, PK, N, NK, NP, and NPK) and plants were harvested at maturity. The aboveground biomass at the elongating stage and grain yield at maturity for NPK treatment were higher than the sum of PK and N treatments. N, P, and K interactions enhanced grain yield due to an increase in agronomic N use efficiency (NAE). The co-application of N, P, and K improved N uptake and N recovery efficiency, exceeding the decreases in physiological and internal NUE and thereby improving NAE. Increases in root length and biomass, N uptake per unit root length/root biomass, root oxidation activity, total roots absorption area, and roots active absorption area at the elongating stage improved N uptake via N, P, and K interactions. The higher total N uptake from N, P, and K interactions was due to improved root characteristics, which enhanced the rice yield and NUE.

Background: Nitrogen-based nutrients are the main factors affecting rice growth and development. Root systems play an important role in helping plants to obtain nutrients from the soil. Root morphology and physiology are often closely related to above-ground plant organs performance. Therefore, it is important to understand the regulatory effects of nitrogen (N) on rice root growth to improve nitrogen use efficiency. Results: In this study, changes in the rice root traits under low N (13.33 ppm), normal N (40 ppm) and high N (120 ppm) conditions were performed through root morphology analysis. These results show that, compared with normal N conditions, root growth is promoted under low N conditions, and inhibited under high N conditions. To understand the molecular mechanism underlying the rice root response to low and high N conditions, comparative proteomics analysis was performed using a tandem mass tag (TMT)-based approach, and differentially abundant proteins (DAPs) were further characterized. Compared with normal N conditions, a total of 291 and 211 DAPs were identified under low and high N conditions, respectively. The abundance of proteins involved in cell differentiation, cell wall modification, phenylpropanoid biosynthesis, and protein synthesis was differentially altered, which was an important reason for changes in root morphology. Furthermore, although both low and high N can cause nitrogen stress, rice roots revealed obvious differences in adaptation to low and high N. Conclusions: These results provide insights into global changes in the response of rice roots to nitrogen availability and may facilitate the development of rice cultivars with high nitrogen use efficiency through root-based genetic improvements.

Phosphorus (P) and potassium (K) stress significantly affect the growth, physiological characteristics, and nutrient uptake of rice plants. This study investigated the photosynthetic nitrogen (N) metabolism, N uptake, and N utilization of plants under varied P and K supplies. Two local conventional high-yield rice varieties (Shennong 265 and Liaojing 294) were used. These varieties were subjected to the following hydroponic experimental treatments: HPHK (normal P and K concentrations), HPLK (normal P and 1/20 normal K concentration), LPHK (normal K and 1/20 normal P concentration), and LPLK (1/20 normal P and K concentrations). The results showed that the mesophyll cells had a relatively complete nuclear and chloroplast structures, and the antioxidant enzymes of the plants were significantly reduced under the HPHK treatment. Compared to the LP treatments (LPHK and LPLK), the HPHK treatment was found to have the following potential effects: effectively optimize plant configuration; promote leaf development (Pn, E, Ci, and Tr, chlorophyll, and leaf area index); significantly increase the N-metabolism-related enzyme activity of leaves and roots and the accumulation of N in the plant in the main growth stages; and significantly increase the rice yield and N-related efficiency. In conclusion, the HPHK treatment was found to be beneficial in improving the plant configuration, promoting photosynthetic N metabolism, and increasing grain yield and N-related utilization efficiency.

To reveal the regulatory effects of nitrogen and phosphorus interactions on grain-filling- and starch-synthesis-related enzymes, and grain weight of superior grains (SGs) and inferior grains (IGs) and taste quality, the japonica rice cultivar Shennong 265 was grown under field conditions with three nitrogen levels (210, 178.5, and 147 kg N ha⁻¹; N3, N2, and N1) and two phosphorus levels (105 and 73.5 kg P ha⁻¹; P2 and P1). At the N3 level, the yield of P1 was significantly lower (by 19.26%) compared to P2; at the N2 and N1 levels, P1 yielded higher than P2, peaking at N2P1. Spikelets per panicle showed P2 exceeding P1 at the same nitrogen level, with the highest for both SGs and IGs observed at N2P2, followed by N2P1. Reductions in nitrogen and phosphorus decreased the grain-filling rate but prolonged the duration for grain-filling. N2P1 maintained grain weight by extending the grain-filling duration across the early, middle, and late stages of IGs, and the middle and late stages of SGs. Increased nitrogen enhanced the activities of soluble starch synthase (SSS) and starch branching enzyme (SBE), whereas increased phosphorus inhibited these activities in SGs but enhanced them in IGs. Reduced nitrogen and phosphorus fertilizer diminished ADP glucose pyrophosphorylase (AGPP) and granule-bound starch synthase (GBSS) activities in SGs and IGs, inhibiting amylose accumulation while enhancing taste value. Compared with N3P2, the taste value of N2P1 increased significantly by 6.93%, attributed to a higher amylopectin/amylose ratio. N2P1 (178.5 kg N ha⁻¹ and 73.5 kg P ha⁻¹) optimized enzyme activity, starch composition, and grain filling, balancing both yield and taste, and thus demonstrated an effective fertilization strategy for stable rice production.