Makoto Ohta

Dr. Makoto Ohta

orcid

Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 October 2011 in Proceedings of the National Academy of Sciences
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Journal Article
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KYKeitaro Yamashita
Keitaro Yamashita
YKYuka Kawai
Yuka Kawai
YTYoshikazu Tanaka
Yoshikazu Tanaka
NHNagisa Hirano
Nagisa Hirano
JKJun Kaneko
Jun Kaneko
ITIsao Tanaka
Isao Tanaka
Staphylococcal γ-hemolysin is a bicomponent pore-forming toxin composed of LukF and Hlg2. These proteins are expressed as water-soluble monomers and then assemble into the oligomeric pore form on the target cell. Here, we report the crystal structure of the octameric pore form of γ-hemolysin at 2.5 Å resolution, which is the first high-resolution structure of a β-barrel transmembrane protein composed of two proteins reported to date. The octameric assembly consists of four molecules of LukF and Hlg2 located alternately in a circular pattern, which explains the biochemical data accumulated over the past two decades. The structure, in combination with the monomeric forms, demonstrates the elaborate molecular machinery involved in pore formation by two different molecules, in which interprotomer electrostatic interactions using loops connecting β2 and β3 (loop A: Asp43-Lys48 of LukF and Lys37-Lys43 of Hlg2) play pivotal roles as the structural determinants for assembly through unwinding of the N-terminal β-strands (amino-latch) of the adjacent protomer, releasing the transmembrane stem domain folded into a β-sheet in the monomer (prestem), and interaction with the adjacent protomer.

1 July 2008 in Journal of Biomechanics
Verified
Journal Article
Closed access
ARA.G. Radaelli
A.G. Radaelli
LAL. Augsburger
L. Augsburger
JCJ.R. Cebral
J.R. Cebral
MOMakoto Ohta
Makoto Ohta
DRD.A. Rüfenacht
D.A. Rüfenacht
Attilio FrangiAttilio Frangi
Attilio Frangi

18 June 2019 in Journal of Cerebral Blood Flow & Metabolism
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Journal Article
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Khalid M. SaqrKhalid M. Saqr
Khalid M. Saqr
SRSherif Rashad
Sherif Rashad
Simon TupinSimon Tupin
Simon Tupin
KNKuniyasu Niizuma
Kuniyasu Niizuma
THTamer Hassan
Tamer Hassan
MOMakoto Ohta
Makoto Ohta
Despite the plethora of published studies on intracranial aneurysms (IAs) hemodynamic using computational fluid dynamics (CFD), limited progress has been made towards understanding the complex physics and biology underlying IA pathophysiology. Guided by 1733 published papers, we review and discuss the contemporary IA hemodynamics paradigm established through two decades of IA CFD simulations. We have traced the historical origins of simplified CFD models which impede the progress of comprehending IA pathology. We also delve into the debate concerning the Newtonian fluid assumption used to represent blood flow computationally. We evidently demonstrate that the Newtonian assumption, used in almost 90% of studies, might be insufficient to describe IA hemodynamics. In addition, some fundamental properties of the Navier–Stokes equation are revisited in supplementary material to highlight some widely spread misconceptions regarding wall shear stress (WSS) and its derivatives. Conclusively, our study draws a roadmap for next-generation IA CFD models to help researchers investigate the pathophysiology of IAs.

1 November 2013 in Neurosurgery
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Journal Article
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SSShin-Ichiro Sugiyama
Shin-Ichiro Sugiyama
KNKuniyasu Niizuma
Kuniyasu Niizuma
TNToshio Nakayama
Toshio Nakayama
HSHiroaki Shimizu
Hiroaki Shimizu
HEHidenori Endo
Hidenori Endo
TTTeiji Tominaga
Teiji Tominaga
BACKGROUND:. Intracranial aneurysms can have atherosclerotic wall properties that may be important in predicting aneurysm history or estimating the pote

1 January 2001 in MATERIALS TRANSACTIONS
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Journal Article
Closed access
YAYousef Al-Abdullat
Yousef Al-Abdullat
STSadami Tsutsumi
Sadami Tsutsumi
NNNaoki Nakajima
Naoki Nakajima
MOMakoto Ohta
Makoto Ohta
HKHideyuki Kuwahara
Hideyuki Kuwahara
KIKen Ikeuchi
Ken Ikeuchi

1 October 2016 in Stroke
Verified
Journal Article
Closed access
SSShin-Ichiro Sugiyama
Shin-Ichiro Sugiyama
KNKuniyasu Niizuma
Kuniyasu Niizuma
KSKenichi Sato
Kenichi Sato
SRSherif Rashad
Sherif Rashad
MKMisaki Kohama
Misaki Kohama
TTTeiji Tominaga
Teiji Tominaga
Background and Purpose—: Hemodynamic forces may play a role in the recanalization of coiled aneurysms. The purpose of this study was to investigate the influence of presurgical hemodynamics on the efficacy of coil embolization for basilar tip aneurysms. Methods—: We identified 82 patients who underwent endovascular coil embolization for basilar tip aneurysms with a follow-up of >1 year. Presurgical hemodynamics were investigated using computational fluid dynamics with 3-dimensional data derived from rotational angiography. During postprocessing, we quantified the rate of net flow entering the aneurysm through its neck and calculated the proportion of the aneurysmal inflow rate to the basilar artery flow rate. In addition, we investigated the correlation between the basilar bifurcation configuration and the hemodynamics. Results—: Twenty-five of the 82 patients were excluded because of difficult vascular geometry reconstruction. Among the 57 examined patients, angiographic recanalization was observed in 19 patients (33.3%). The proportion of the aneurysmal inflow rate to the basilar artery flow rate and a coil packing density <30% were independent and significant predictors for the recanalization of coiled aneurysms. Additional investigation revealed that a small branch angle formed by the basilar artery and the posterior cerebral artery increased blood flow into the aneurysm. Conclusions—: The proportion of the aneurysmal inflow rate to the basilar artery flow rate, influenced by the basilar bifurcation configuration, was an independent and significant predictor for recanalization after coil embolization in basilar tip aneurysms.