Aquaponics is the combination of aquaculture (fish) and hydroponic cultivation of plants. This review examines fish welfare in relation to rearing water quality, fish feed and fish waste and faeces to develop a sustainable aquaponic system where the co-cultured organisms, fish, bacteria in biofilters and plants, should be considered holistically in all aquaponics operations. Water quality parameters are the primary environmental consideration for optimizing aquaponic production and for directly impacting fish welfare/health issues and plant needs. In aquaponic systems, the uptake of nutrients should be maximised for the healthy production of the plant biomass but without neglecting the best welfare conditions for the fish in terms of water quality. Measures to reduce the risks of the introduction or spread of diseases or infection and to increase biosecurity in aquaponics are also important. In addition, the possible impacts of allelochemicals, i.e., chemicals released by the plants, should be taken into account. Moreover, the effect of diet digestibility, faeces particle size and settling ratio on water quality should be carefully considered. As available information is very limited, research should be undertaken to better elucidate the relationship between appropriate levels of minerals needed by plants, and fish metabolism, health and welfare. It remains to be investigated whether and to what extent the concentrations of suspended solids that can be found in aquaponic systems can compromise the health of fish. Water quality, which directly affects fish health and well-being, is the key factor to be considered in all aquaponic systems.

This study investigated the profile of the autochthonous gut bacterial communities in adult individuals of Sparus aurata and Dicentrarchus labrax reared in sea cages in five distantly located aquaculture farms in Greece and determine the impact of geographic location on them in order to detect the core gut microbiota of these commercially important fish species. Data analyses resulted in no significant geographic impact in the gut microbial communities within the two host species, while strong similarities between them were also present. Our survey revealed the existence of a core gut microbiota within and between the two host species independent of diet and geographic location consisting of the Delftia, Pseudomonas, Pelomonas, Propionibacterium, and Atopostipes genera.

Organic aquaculture has lagged behind the agriculture sector in terms of the quantities and diversity of certified organic products because of the absence of detailed accepted standards and criteria until recently. The main challenges for organic aquaculture are to improve the coordination between production and market and to achieve an appropriate framework to drive further development. Priorities for research include organic feeds and fish nutrition, consumers' needs, food safety, environmental concerns and trade issues. In organically cultured fish, differences in feeds and nutrition compared to conventional systems are likely to result in differences in the quality of the flesh, and this is a significant factor in consumer choice. The review covers aspects of current use of eco-certification, formulated feeds, feed composition, aquafeed technology, sustainable alternatives to common feed ingredients, nutritional physiology and general nutritional principles and product quality in the context of the organic aquaculture. There is a future for the development of organic aquaculture but its success depends on new knowledge and technical development to meet consumers' growing interest. The industry has to utilize the research results and update and modify the criteria and standards and thus provide high-quality products

Insect proteins are considered as suitable low environmental impact alternatives to fishmeal for sustainable aquafeeds. Among the different insect species, Hermetia illucens has attracted research and industrial interest due to its ability to grow well on organic side streams, its high protein content and favorable amino acid profiles. Its lipid content although high is characterized by a lack of EPA and DHA that are essential to fish nutrition and thus a defatted form of Hermetia meal might be of better use in fish diets. Hence, two feeding trials were conducted to investigate the effects of the partial fishmeal replacement by increasing levels of a full-fat (up to 276 g/kg) and a defatted (up to 174 g/kg) H. illucens meal on feed intake, growth, feed utilization and nutrient compositions of gilthead seabream (Sparus aurata). Results showed that both the fat content and the inclusion level of H. illucens meal are critical for the success of fishmeal replacement in the diets of S. aurata as they strongly affect feed consumption. A lower palatability of H. illucens meal was observed when included at high dietary levels with the defatted form being more readily accepted by fish. The defatted H. illucens meal is more suitable than the full-fat type to replace fishmeal, with a dietary level of about 81–104 g/kg supporting the highest feed consumption, the highest growth, an unaffected proximate composition and a better feed utilization by S. aurata.