The circular bioeconomy, centred on the principles of “Reduce, Reuse, and Recycle”, is central to achieving the goals of the European Green Deal and the “Farm to Fork” strategy. The key approach, within this framework, is the valorisation of food processing side-streams through various processing technologies to produce fertilisers that, when applied to the soil, act as potential “soil improvers”. When applied to soil, these materials affect not only the physical, chemical, and biological properties of soil but also impact greenhouse gas emissions, nutrient leaching, and the levels of contaminants or pathogens. A systematic review of field studies conducted in European soils between 2014 and 2024 was performed with stringent inclusion and exclusion criteria, which allowed the identification of suitable articles in three independent steps. The main soil improvers derived from various agri-food side-streams were biochar, compost, and digestate. Their effects, along with the potential risks associated with their use in agricultural fields, were carefully evaluated and discussed. This review forms part of the DeliSoil project “Delivering safe, sustainable, tailored & societally accepted soil improvers from circular food production for boosting soil health” funded under the European Union “A Soil Deal for Europe”. This systematic review showed that soil improvers enhance soil health by improving microbial diversity, organic matter, and water retention, and by boosting plant growth. However, potential risks require careful management, and long-term studies are needed to fully assess their environmental and agronomic impacts. Graphical Abstract

The strengthening effect of a mild temperature treatment on the antimicrobial efficacy of essential oils has been widely reported, often leading to an underestimation or a misinterpretation of the product’s microbial status. In the present study, both a traditional culture-based method and Flow Cytometry (FCM) were applied to monitor the individual or combined effect of Origanum vulgare essential oil (OEO) and mild heat treatment on the culturability and viability of Escherichia coli in a conventional culture medium and in a fruit juice challenge test. The results obtained in the culture medium showed bacterial inactivation with an increasing treatment temperature (55 °C, 60 °C, 65 °C), highlighting an overestimation of the dead population using the culture-based method; in fact, when the FCM method was applied, the prevalence of injured bacterial cells in a viable but non-culturable (VBNC) state was observed. When commercial fruit juice with a pH of 3.8 and buffered at pH 7.0 was inoculated with E. coli ATCC 25922, a bactericidal action of OEO and a higher efficiency of the mild heat at 65 °C for 5′ combined with OEO were found. Overall, the combination of mild heat and OEO treatment represents a promising antimicrobial alternative to improve the safety of fruit juice.

Antibiotic resistance (AR) is recognized by the World Health Organization as a major threat to human health, and recent studies highlight the role of microplastics (MPs) in its spread. MPs in the environment may act as vectors for antibiotic-resistant bacteria (ARB) and antibiotic resistance genes (ARGs). Bacterial communities on the plastisphere, the surface of MPs, are influenced by plastic properties, allowing ARB to colonize and form biofilms. These biofilms facilitate the transfer of ARGs within microbial communities. This study analyzed data from the LUCAS soil dataset (885 soil samples across EU countries) using the Emu tool to characterize microbial communities at the genus/species level. Functional annotation via PICRUSt2, supported by a custom tool for Emu output formatting, revealed significant correlations between the genera Solirubrobacter, Bradyrhizobium, Nocardioides, and Bacillus with pathways linked to microplastic degradation and antibiotic resistance. These genera were consistently present in various soil types (woodland, grassland, and cropland), suggesting their potential as bioindicators of soil health in relation to MP pollution. The findings underscore MPs as hotspots for ARB and ARGs, offering new insights into the identification of bioindicators for monitoring soil health and the ecological impacts related to MP contamination.

The role of soil microbial communities in soil organic matter (OM) decomposition, transformation, and the global nitrogen (N) and carbon (C) cycles has been widely investigated. However, a comprehensive understanding of how specific agricultural practices and OM inputs shape microbial-driven processes across different European pedoclimatic conditions is still lacking, particularly regarding their effectiveness in mitigating greenhouse gas (GHG) emissions. This systematic review synthesizes current knowledge on the biotic mechanisms underlying soil C sequestration and GHG reduction, emphasizing key microbial processes influenced by land management practices. A rigorous selection was applied, resulting in 16 eligible articles that addressed the targeted outcomes: soil microorganism biodiversity, including microbiome composition and other common Biodiversity Indexes, C sequestration and non-CO₂ GHG emissions (namely N₂O and CH₄ emissions), and N leaching. The review highlights that, despite some variations across studies, the application of OM enhances soil microbial biomass (MB) and activity, boosts soil organic carbon (SOC), and potentially reduces emissions. Notably, plant richness and diversity emerged as critical factors in reducing N₂O emissions and promoting carbon storage. However, the lack of methodological standardization across studies hinders meaningful comparison of outcomes—a key challenge identified in this review. The analysis reveals that studies examining the simultaneous effects of agricultural management practices and OM inputs on soil microorganisms, non-CO₂ GHG emissions, and SOC are scarce. Standardized studies across Europe’s diverse pedoclimatic regions would be valuable for assessing the benefits of OM inputs in agricultural soils. This would enable the identification of region-specific solutions that enhance soil health, prevent degradation, and support sustainable and productive farming systems.

Soil health is crucial for the sustainability of agricultural practices and ecosystem resilience. Using a data mining approach, this study aims to explore emerging themes related to the impact of soil improvers on soil health by analyzing results from various EU-funded agricultural projects, with the final goal of identifying the key factors driving the effectiveness of soil amendments. By integrating data mining and text analysis, the study extracts, aggregates, and visualizes insights, providing a comprehensive overview of innovative strategies to enhance soil fertility and promote ecological balance. This integrated analytical framework offers a nuanced understanding of the conceptual landscape surrounding soil health in EU projects, highlighting the multifaceted roles of organic amendments and microbial solutions. Our findings underscore the critical link between organic amendments and soil health, highlighting their potential as strategic tools for achieving more sustainable agricultural systems. These findings provide a basis for refining soil management strategies in agriculture and support the development of evidence-based policies aimed at improving soil health and fostering ecological balance across Europe.