The chirality controlled conformational landscape of the trimer of propylene oxide (PO), a prototypical chiral molecule, was investigated using rotational spectroscopy and a range of theoretical tools for conformational searches and for evaluating vibrational contributions to effective structures. Two sets of homochiral (PO)3 rotational transitions were assigned and the associated conformers identified with theoretical support. One set of heterochiral (PO)3 transitions was assigned, but no structures generated by one of the latest, advanced conformational search codes could account for them. With the aid of a Python program, the carbon atom backbone and then the heterochiral (PO)3 structure were generated using 13C isotopic data. Excellent agreement between theoretical and experimental rotational constants and relative dipole moment components of all three conformers was achieved, especially after applying vibrational corrections to the rotational constants.
2 February 2023 in Journal of Chemical Theory and Computation
The accurate characterization of prototypical bricks of life can strongly benefit from the integration of high resolution spectroscopy and quantum mechanical computations. We have selected a number of representative amino acids (glycine, alanine, serine, cysteine, threonine, aspartic acid and asparagine) to validate a new computational setup rooted in quantum-chemical computations of increasing accuracy guided by machine learning tools. Together with low-lying energy minima, the barriers ruling their interconversion are evaluated in order to unravel possible fast relaxation paths. Vibrational and thermal effects are also included in order to estimate relative free energies at the temperature of interest in the experiment. The spectroscopic parameters of all the most stable conformers predicted by this computational strategy, which do not have low-energy relaxation paths available, closely match those of the species detected in microwave experiments. Together with their intrinsic interest, these accurate results represent ideal benchmarks for more approximate methods.
The octahedral ionic Ir(III) complex with a dual stereogenic centre of general formula Δ,Λ-(R,S)-[(ppy)2Ir(Me-Campy)]X, where ppy = 2-phenylpyridine and Me-Campy = 2-methyl-5,6,7,8-tetrahydroquinolin-8-amine, and the complex Λ-(R,S)-[(ppy)2Ir(H-Campy)]X, where ppy = 2-phenylpyridine, H-Campy = 8-amino-5,6,7,8-tetrahydroquinolines and X− = Cl− as a counterion in both cases, have been characterized by vibrational circular dichroism (VCD), which turns out to be efficacious in diastereomeric discrimination. Moreover, the single crystal X-ray structure of the complex Δ-(R)-[(ppy)2Ir(Me-Campy)]Cl is reported here. Density functional theory (DFT) calculations allow us to conclude that the most important doublet feature in the VCD spectra is associated with a clear vibrational exciton structure located on the two dissymmetrically disposed phenylpyridine ligands. The features in the VCD spectra associated with the (R) or (S)-central chirality configuration are identified and commented on. DFT calculations provide also the interpretation of electronic circular dichroism (ECD) spectra. Finally, circularly polarized luminescence (CPL) spectra are presented as an additional chiroptical characterization of these luminescent iridium complexes.
24 September 2020 in The Journal of Chemical Physics
The fruitful interplay of high-resolution spectroscopy and quantum chemistry has a long history, especially in the field of small, semi-rigid molecules. However, in recent years, the targets of spectroscopic studies are shifting toward flexible molecules, characterized by a large number of closely spaced energy minima, all contributing to the overall spectrum. Here, artificial intelligence comes into play since it is at the basis of powerful unsupervised techniques for the exploration of soft degrees of freedom. Integration of such algorithms with a two-stage QM/QM′ (Quantum Mechanical) exploration/refinement strategy driven by a user-friendly graphical interface is the topic of the present paper. We will address in particular: (i) the performances of different semi-empirical methods for the exploration step and (ii) the comparison between stochastic and meta-heuristic algorithms in achieving a cheap yet complete exploration of the conformational space for medium sized chromophores. As test cases, we choose three amino acids of increasing complexity, whose full conformer enumeration has been reached only very recently. Next, we show that systems in condensed phases can be treated at the same level and with the same efficiency when employing a polarizable continuum description of the solvent. Finally, the challenging issue represented by the vibrational circular dichroism spectra of some rhodium complexes with flexible ligands has been addressed, showing that our fully unsupervised approach leads to remarkable agreement with the experiment.
3 October 2019 in The Journal of Physical Chemistry B