Fathiya Khamis

Dr. Fathiya Khamis

Plant Health, International Centre of Insect Physiology and Ecology, Nairobi, Nairobi City, Kenya
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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 June 2019 in Phytoparasitica
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BNBenignus Valentine Ngowi
Benignus Valentine Ngowi
HTHenri Edouardo-Zefack Tonnang
Henri Edouardo-Zefack Tonnang
Fathiya KhamisFathiya Khamis
Fathiya Khamis
Evans MwangiEvans Mwangi
Evans Mwangi
BNBrigitte Nyambo
Brigitte Nyambo
SSSevgan Subramanian
Sevgan Subramanian

2 March 2019 in Animals
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MSMarwa Shumo
Marwa Shumo
Fathiya KhamisFathiya Khamis
Fathiya Khamis
CTChrysantus Tanga
Chrysantus Tanga
KFKomi Fiaboe
Komi Fiaboe
SSSevgan Subramanian
Sevgan Subramanian
CBChristian Borgemeister
Christian Borgemeister
In sub-Saharan Africa, urban populations are projected to increase by 115% in the coming 15 years. In addition, economic growth and dietary shifts towards animal source foods have put high pressure and demand on agricultural production. The high ecological footprint of meat and dairy production, as well as high feed costs, prevent the livestock sector from meeting the increasing demand in a sustainable manner. Insects such as the black soldier fly (BSF) have been identified as potential alternatives to the conventionally used protein sources in livestock feed due to their rich nutrient content and the fact that they can be reared on organic side streams. Substrates derived from organic byproducts are suitable for industrial large-scale production of insect meal. Although efficient in waste management and in feed production, BSF larvae are very sensitive to the external environment such as temperature and rearing medium. Therefore, we studied the effect of temperature and substrate type, i.e., brewers’ spent grain (SG) and cow dung (CD), on the development and survival of BSF larvae. Both organic substrates were readily available in Nairobi, Kenya, the location of the experiments. In our experiment, 100 3–5-day-old BSF larvae were placed into containers that contained either SG or CD and further treated at temperatures of 15 °C, 20 °C, 25 °C, 30 °C, and 35 °C. The duration of larval development was recorded, and the prepupae were removed, weighed, and placed individually in separate, labeled, 35-mL plastic cups filled with moist sawdust. After emergence, 10 2-day-old adults (5 males and 5 females) from every replica per substrate were transferred into a cage (40 × 40 × 40 cm) and allowed to mate for 24 h at their respective temperatures. The laid egg batches were collected and counted, and the adult flies’ longevity was recorded. The data were subjected to a two-way analysis of variance (ANOVA) using the general linear model procedure. BSF larvae reared on SG developed faster than those reared on CD; the former also favored higher temperatures for their larval development and emergence into adults. The optimum range was 25–30 °C. With increasing temperatures, the longevity of adult BSF decreased, while the fecundity of females increased. Thus, it is possible to take advantage of the readily available SG waste streams in the urban environments of Kenya to produce BSF larvae-derived livestock feed within a short duration of time and at relatively high temperatures.

15 September 2020 in Agronomy
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DBDennis Beesigamukama
Dennis Beesigamukama
BMBenson Mochoge
Benson Mochoge
NKNicholas Korir
Nicholas Korir
MMMartha W. Musyoka
Martha W. Musyoka
KFKomi Fiaboe
Komi Fiaboe
CTChrysantus Tanga
Chrysantus Tanga
The use of black soldier fly frass fertilizer (BSFFF) is being promoted globally. However, information on nitrogen (N) fertilizer equivalence (NFE) value and synchrony of N mineralization for crop production remains largely unknown. Comparative studies between BSFFF and commercial organic fertilizer (SAFI) were undertaken under field conditions to determine synchrony of N release for maize uptake. The BSFFF, SAFI, and urea fertilizers were applied at the rates of 0, 30, 60, and 100 kg N ha−1. The yield data from urea treated plots were used to determine the NFE of both organic inputs. Results showed that maize from BSFFF treated plots had higher N uptake than that from SAFI treated plots. High N immobilization was observed throughout the active growth stages of maize grown in soil amended with BSFFF, whereas soil treated with SAFI achieved net N release at the silking stage. Up to three times higher negative N fluxes were observed in SAFI amended soils as compared with BSFFF treated plots at the tasseling stage. The BSFFF applied at 30 and 60 kg N ha−1 achieved significantly higher NFE than all SAFI treatments. Our findings revealed that BSFFF is a promising and sustainable alternative to SAFI or urea for enhanced maize production.

7 July 2020 in Frontiers in Microbiology
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Fathiya KhamisFathiya Khamis
Fathiya Khamis
FOFidelis L. O. Ombura
Fidelis L. O. Ombura
KAKomivi S. Akutse
Komivi S. Akutse
SSSevgan Subramanian
Sevgan Subramanian
SMSamira A. Mohamed
Samira A. Mohamed
CTChrysantus M. Tanga
Chrysantus M. Tanga
The utilization of the black soldier fly (BSF) Hermetia illucens L. for recycling organic waste into high-quality protein and fat biomass for animal feeds has gained momentum worldwide. However, information on the genetic diversity and environmental implications on safety of the larvae is limited. This study delineates genetic variability and unravels gut microbiome complex of wild-collected and domesticated BSF populations from six continents using mitochondrial COI gene and 16S metagenomics. All sequences generated from the study linked to H. illucens accessions KM967419.1, FJ794355.1, FJ794361.1, FJ794367.1, KC192965.1, and KY817115.1 from GenBank. Phylogenetic analyses of the sequences generated from the study and rooted by GenBank accessions of Hermetia albitarsis Fabricius and Hermetia sexmaculata Macquart separated all samples into three branches, with H. illucens and H. sexmaculata being closely related. Genetic distances between H. illucens samples from the study and GenBank accessions of H. illucens ranged between 0.0091 and 0.0407 while H. sexmaculata and H. albitarsis samples clearly separated from all H. illucens by distances of 0.1745 and 0.1903, respectively. Genetic distance matrix was used to generate a principal coordinate plot that further confirmed the phylogenetic clustering. Haplotype network map demonstrated that Australia, United States 1 (Rhode Island), United States 2 (Colorado), Kenya, and China shared a haplotype, while Uganda shared a haplotype with GenBank accession KC192965 BSF from United States. All other samples analyzed had individual haplotypes. Out of 481,695 reads analyzed from 16S metagenomics, four bacterial families (Enterobactereaceae, Dysgonomonadaceae, Wohlfahrtiimonadaceae, and Enterococcaceae) were most abundant in the BSF samples. Alpha-diversity, as assessed by Shannon index, showed that the Kenyan and Thailand populations had the highest and lowest microbe diversity, respectively; while microbial diversity assessed through Bray Curtis distance showed United States 3 (Maysville) and Netherlands populations to be the most dissimilar. Our findings on genetic diversity revealed slight phylogeographic variation between BSF populations across the globe. The 16S data depicted larval gut bacterial families with economically important genera that might pose health risks to both animals and humans. This study recommends pre-treatment of feedstocks and postharvest measures of the harvested BSF larvae to minimize risk of pathogen contamination along the insect-based feed value chain.

17 September 2012 in PLOS ONE
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Fathiya KhamisFathiya Khamis
Fathiya Khamis
DMDaniel K. Masiga
Daniel K. Masiga
SMSamira A. Mohamed
Samira A. Mohamed
DSDaisy Salifu
Daisy Salifu
MMMarc de Meyer
Marc de Meyer
SESunday Ekesi
Sunday Ekesi
In 2003, a new fruit fly pest species was recorded for the first time in Kenya and has subsequently been found in 28 countries across tropical Africa. The insect was described as Bactrocera invadens, due to its rapid invasion of the African continent. In this study, the morphometry and DNA Barcoding of different populations of B. invadens distributed across the species range of tropical Africa and a sample from the pest's putative aboriginal home of Sri Lanka was investigated. Morphometry using wing veins and tibia length was used to separate B. invadens populations from other closely related Bactrocera species. The Principal component analysis yielded 15 components which correspond to the 15 morphometric measurements. The first two principal axes contributed to 90.7% of the total variance and showed partial separation of these populations. Canonical discriminant analysis indicated that only the first five canonical variates were statistically significant. The first two canonical variates contributed a total of 80.9% of the total variance clustering B. invadens with other members of the B. dorsalis complex while distinctly separating B. correcta, B. cucurbitae, B. oleae and B. zonata. The largest Mahalanobis squared distance (D2 = 122.9) was found to be between B. cucurbitae and B. zonata, while the lowest was observed between B. invadens populations against B. kandiensis (8.1) and against B. dorsalis s.s (11.4). Evolutionary history inferred by the Neighbor-Joining method clustered the Bactrocera species populations into four clusters. First cluster consisted of the B. dorsalis complex (B. invadens, B. kandiensis and B. dorsalis s. s.), branching from the same node while the second group was paraphyletic clades of B. correcta and B. zonata. The last two are monophyletic clades, consisting of B. cucurbitae and B. oleae, respectively. Principal component analysis using the genetic distances confirmed the clustering inferred by the NJ tree.

23 January 2021 in Journal of Pest Science
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CKCharles Kwadha
Charles Kwadha
LOLouis A. Okwaro
Louis A. Okwaro
IKIsabella Kleman
Isabella Kleman
GRGuillermo Rehermann
Guillermo Rehermann
SRSantosh Revadi
Santosh Revadi
PBPaul G. Becher
Paul G. Becher
The spotted wing drosophila, Drosophila suzukii Matsumura, is an insect pest of soft-skinned fruit, native to Eastern Asia. Since 2008, a world-wide dispersal of D. suzukii is seen, characterized by the establishment of the pest in many Asian, American and European countries. While the potential for invasion of continental Africa by D. suzukii has been predicted, its presence has only been shown for Morocco in Northern Africa. Knowledge about a possible establishment in other parts of the continent is needed as a basis for pest management. In 2019, we carried out a first survey in three counties in Kenya to monitor for the presence of D. suzukii using traps baited with a blend of apple cider vinegar and red wine. A total of 389 D. suzukii flies were captured in a fruit farm at Nakuru county, with more female flies being trapped than males. We confirmed the morphological identification of D. suzukii using DNA barcoding. In 2020, we performed a follow-up survey at 14 locations in six counties to delimit the distribution of D. suzukii in the main berry growing zones in Kenya. The survey indicated that so far D. suzukii is restricted to Nakuru county where it was initially detected. This is the first study to provide empirical evidence of D. suzukii in continental sub-Saharan Africa, confirming that the pest is expanding its geographic range intercontinentally. Given the high dispersal potential of D. suzukii, a concerted effort to develop management strategies is a necessity for containment of the pest.