Akshay Pai

Dr. Akshay Pai


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 September 2022
Verified
Book Chapter
Closed access
PDF file
PDPengfei Diao
Pengfei Diao
APAkshay Pai
Akshay Pai
CIChristian Igel
Christian Igel
CKChristian Hedeager Krag
Christian Hedeager Krag

27 December 2023 in Diagnostics
Verified
Journal Article
Open access
PDF file
JJJacob Johansen
Jacob Johansen
COCecilie Juul Mørck Offersen
Cecilie Juul Mørck Offersen
Jonathan Frederik CarlsenJonathan Frederik Carlsen
Jonathan Frederik Carlsen
SISilvia Ingala
Silvia Ingala
AHAdam E. Hansen
Adam E. Hansen
APAkshay Pai
Akshay Pai
DWI/FLAIR mismatch assessment for ischemic stroke patients shows promising results in determining if patients are eligible for recombinant tissue-type plasminogen activator (r-tPA) treatment. However, the mismatch criteria suffer from two major issues: binary classification of a non-binary problem and the subjectiveness of the assessor. In this article, we present a simple automatic method for segmenting stroke-related parenchymal hyperintensities on FLAIR, allowing for an automatic and continuous DWI/FLAIR mismatch assessment. We further show that our method’s segmentations have comparable inter-rater agreement (DICE 0.820, SD 0.12) compared to that of two neuro-radiologists (DICE 0.856, SD 0.07), that our method appears robust to hyper-parameter choices (suggesting good generalizability), and lastly, that our methods continuous DWI/FLAIR mismatch assessment correlates to mismatch assessments made for a cohort of wake-up stroke patients at hospital submission. The proposed method shows promising results in automating the segmentation of parenchymal hyperintensity within ischemic stroke lesions and could help reduce inter-observer variability of DWI/FLAIR mismatch assessment performed in clinical environments as well as offer a continuous assessment instead of the current binary one.

19 June 2023 in Diagnostics
Verified
Journal Article
Open access
PDF file
COCecilie Juul Mørck Offersen
Cecilie Juul Mørck Offersen
JSJens Sørensen
Jens Sørensen
KSKaining Sheng
Kaining Sheng
Jonathan Frederik CarlsenJonathan Frederik Carlsen
Jonathan Frederik Carlsen
ALAnnika Reynberg Langkilde
Annika Reynberg Langkilde
Michael Bachmann NielsenMichael Bachmann Nielsen
Michael Bachmann Nielsen
We conducted this Systematic Review to create an overview of the currently existing Artificial Intelligence (AI) methods for Magnetic Resonance Diffusion-Weighted Imaging (DWI)/Fluid-Attenuated Inversion Recovery (FLAIR)—mismatch assessment and to determine how well DWI/FLAIR mismatch algorithms perform compared to domain experts. We searched PubMed Medline, Ovid Embase, Scopus, Web of Science, Cochrane, and IEEE Xplore literature databases for relevant studies published between 1 January 2017 and 20 November 2022, following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We assessed the included studies using the Quality Assessment of Diagnostic Accuracy Studies 2 tool. Five studies fit the scope of this review. The area under the curve ranged from 0.74 to 0.90. The sensitivity and specificity ranged from 0.70 to 0.85 and 0.74 to 0.84, respectively. Negative predictive value, positive predictive value, and accuracy ranged from 0.55 to 0.82, 0.74 to 0.91, and 0.73 to 0.83, respectively. In a binary classification of ±4.5 h from stroke onset, the surveyed AI methods performed equivalent to or even better than domain experts. However, using the relation between time since stroke onset (TSS) and increasing visibility of FLAIR hyperintensity lesions is not recommended for the determination of TSS within the first 4.5 h. An AI algorithm on DWI/FLAIR mismatch assessment focused on treatment eligibility, outcome prediction, and consideration of patient-specific data could potentially increase the proportion of stroke patients with unknown onset who could be treated with thrombolysis.

3 August 2022 in Diagnostics
Verified
Journal Article
Open access
PDF file
KSKaining Sheng
Kaining Sheng
COCecilie Juul Mørck Offersen
Cecilie Juul Mørck Offersen
JMJon Middleton
Jon Middleton
Jonathan Frederik CarlsenJonathan Frederik Carlsen
Jonathan Frederik Carlsen
Thomas Clement TruelsenThomas Clement Truelsen
Thomas Clement Truelsen
Michael Bachmann NielsenMichael Bachmann Nielsen
Michael Bachmann Nielsen
We conducted a systematic review of the current status of machine learning (ML) algorithms’ ability to identify multiple brain diseases, and we evaluated their applicability for improving existing scan acquisition and interpretation workflows. PubMed Medline, Ovid Embase, Scopus, Web of Science, and IEEE Xplore literature databases were searched for relevant studies published between January 2017 and February 2022. The quality of the included studies was assessed using the Quality Assessment of Diagnostic Accuracy Studies 2 tool. The applicability of ML algorithms for successful workflow improvement was qualitatively assessed based on the satisfaction of three clinical requirements. A total of 19 studies were included for qualitative synthesis. The included studies performed classification tasks (n = 12) and segmentation tasks (n = 7). For classification algorithms, the area under the receiver operating characteristic curve (AUC) ranged from 0.765 to 0.997, while accuracy, sensitivity, and specificity ranged from 80% to 100%, 72% to 100%, and 65% to 100%, respectively. For segmentation algorithms, the Dice coefficient ranged from 0.300 to 0.912. No studies satisfied all clinical requirements for successful workflow improvements due to key limitations pertaining to the study’s design, study data, reference standards, and performance reporting. Standardized reporting guidelines tailored for ML in radiology, prospective study designs, and multi-site testing could help alleviate this.

9 March 2020 in arXiv
Verified
Preprint
Open access
PDF file
MAMauricio Orbes Arteaga
Mauricio Orbes Arteaga
LSLauge Sørensen
Lauge Sørensen
MCM. Jorge Cardoso
M. Jorge Cardoso
MMMarc Modat
Marc Modat
SOSebastien Ourselin
Sebastien Ourselin
APAkshay Pai
Akshay Pai
For proper generalization performance of convolutional neural networks (CNNs) in medical image segmentation, the learnt features should be invariant under particular non-linear shape variations of the input. To induce invariance in CNNs to such transformations, we propose Probabilistic Augmentation of Data using Diffeomorphic Image Transformation (PADDIT) -- a systematic framework for generating realistic transformations that can be used to augment data for training CNNs. We show that CNNs trained with PADDIT outperforms CNNs trained without augmentation and with generic augmentation in segmenting white matter hyperintensities from T1 and FLAIR brain MRI scans.

1 February 2023
Verified
Book Chapter
Closed access
PDF file
JMJon Middleton
Jon Middleton
MBMarko Bauer
Marko Bauer
JJJacob Johansen
Jacob Johansen
MNMads Nielsen
Mads Nielsen
SSStefan Sommer
Stefan Sommer
APAkshay Pai
Akshay Pai