Jan Kybic

Prof. Jan Kybic

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Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 January 2005 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
JKJan Kybic
Jan Kybic
MCM. Clerc
M. Clerc
TAT. Abboud
T. Abboud
OFO. Faugeras
O. Faugeras
RKR. Keriven
R. Keriven
TPT. Papadopoulo
T. Papadopoulo
The forward electroencephalography (EEG) problem involves finding a potential V from the Poisson equation /spl nabla//spl middot/(/spl sigma//spl nabla/V)=f, in which f represents electrical sources in the brain, and /spl sigma/ the conductivity of the head tissues. In the piecewise constant conductivity head model, this can be accomplished by the boundary element method (BEM) using a suitable integral formulation. Most previous work uses the same integral formulation, corresponding to a double-layer potential. We present a conceptual framework based on a well-known theorem (Theorem 1) that characterizes harmonic functions defined on the complement of a bounded smooth surface. This theorem says that such harmonic functions are completely defined by their values and those of their normal derivatives on this surface. It allows us to cast the previous BEM approaches in a unified setting and to develop two new approaches corresponding to different ways of exploiting the same theorem. Specifically, we first present a dual approach which involves a single-layer potential. Then, we propose a symmetric formulation, which combines single- and double-layer potentials, and which is new to the field of EEG, although it has been applied to other problems in electromagnetism. The three methods have been evaluated numerically using a spherical geometry with known analytical solution, and the symmetric formulation achieves a significantly higher accuracy than the alternative methods. Additionally, we present results with realistically shaped meshes. Beside providing a better understanding of the foundations of BEM methods, our approach appears to lead also to more efficient algorithms.

27 October 2003 in IEEE Transactions on Image Processing
Verified
Journal Article
Closed access
JKJan Kybic
Jan Kybic
MUM. Unser
M. Unser
We present an algorithm for fast elastic multidimensional intensity-based image registration with a parametric model of the deformation. It is fully automatic in its default mode of operation. In the case of hard real-world problems, it is capable of accepting expert hints in the form of soft landmark constraints. Much fewer landmarks are needed and the results are far superior compared to pure landmark registration. Particular attention has been paid to the factors influencing the speed of this algorithm. The B-spline deformation model is shown to be computationally more efficient than other alternatives. The algorithm has been successfully used for several two-dimensional (2-D) and three-dimensional (3-D) registration tasks in the medical domain, involving MRI, SPECT, CT, and ultrasound image modalities. We also present experiments in a controlled environment, permitting an exact evaluation of the registration accuracy. Test deformations are generated automatically using a random hierarchical fractional wavelet-based generator.

1 January 2006
Verified
Book Chapter
Closed access
PDF file
IAIgnacio Arganda-Carreras
Ignacio Arganda-Carreras
CSCarlos Óscar S. Sorzano
Carlos Óscar S. Sorzano
RMRoberto Marabini
Roberto Marabini
JCJosé María Carazo
José María Carazo
CSCarlos Ortiz De Solórzano
Carlos Ortiz De Solórzano
JKJan Kybic
Jan Kybic

29 August 2005 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
MLM.J. Ledesma-Carbayo
M.J. Ledesma-Carbayo
JKJan Kybic
Jan Kybic
DMDesco Menéndez Manuel
Desco Menéndez Manuel
ASAndres Santos
Andres Santos
MSM. Suhling
M. Suhling
MUM. Unser
M. Unser
We propose a new spatio-temporal elastic registration algorithm for motion reconstruction from a series of images. The specific application is to estimate displacement fields from two-dimensional ultrasound sequences of the heart. The basic idea is to find a spatio-temporal deformation field that effectively compensates for the motion by minimizing a difference with respect to a reference frame. The key feature of our method is the use of a semi-local spatio-temporal parametric model for the deformation using splines, and the reformulation of the registration task as a global optimization problem. The scale of the spline model controls the smoothness of the displacement field. Our algorithm uses a multiresolution optimization strategy to obtain a higher speed and robustness. We evaluated the accuracy of our algorithm using a synthetic sequence generated with an ultrasound simulation package, together with a realistic cardiac motion model. We compared our new global multiframe approach with a previous method based on pairwise registration of consecutive frames to demonstrate the benefits of introducing temporal consistency. Finally, we applied the algorithm to the regional analysis of the left ventricle. Displacement and strain parameters were evaluated showing significant differences between the normal and pathological segments, thereby illustrating the clinical applicability of our method.

7 April 2020 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
JBJiri Borovec
Jiri Borovec
JKJan Kybic
Jan Kybic
IAIgnacio Arganda-Carreras
Ignacio Arganda-Carreras
DSDmitry V. Sorokin
Dmitry V. Sorokin
Gloria  BuenoGloria Bueno
Gloria Bueno
AMArrate Muñoz-Barrutia
Arrate Muñoz-Barrutia
Automatic Non-rigid Histological Image Registration (ANHIR) challenge was organized to compare the performance of image registration algorithms on several kinds of microscopy histology images in a fair and independent manner. We have assembled 8 datasets, containing 355 images with 18 different stains, resulting in 481 image pairs to be registered. Registration accuracy was evaluated using manually placed landmarks. In total, 256 teams registered for the challenge, 10 submitted the results, and 6 participated in the workshop. Here, we present the results of 7 well-performing methods from the challenge together with 6 well-known existing methods. The best methods used coarse but robust initial alignment, followed by non-rigid registration, used multiresolution, and were carefully tuned for the data at hand. They outperformed off-the-shelf methods, mostly by being more robust. The best methods could successfully register over 98% of all landmarks and their mean landmark registration accuracy (TRE) was 0.44% of the image diagonal. The challenge remains open to submissions and all images are available for download.

17 December 2010 in Medical Physics
Verified
Journal Article
Closed access
JVJef Vandemeulebroucke
Jef Vandemeulebroucke
SRSimon Rit
Simon Rit
JKJan Kybic
Jan Kybic
PCPatrick Clarysse
Patrick Clarysse
DSDavid Sarrut
David Sarrut