Markus Holopainen

Dr. Markus Holopainen


Research Focus & Metrics

Academic Career Length

57Years (1970-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 January 2013 in Remote Sensing
Verified
Journal Article
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PRPasi Raumonen
Pasi Raumonen
MKMikko Kaasalainen
Mikko Kaasalainen
MÅMarkku Åkerblom
Markku Åkerblom
SKSanna Kaasalainen
Sanna Kaasalainen
HKHarri Kaartinen
Harri Kaartinen
PLPHILIP EDWARD LEWIS
PHILIP EDWARD LEWIS
This paper presents a new method for constructing quickly and automatically precision tree models from point clouds of the trunk and branches obtained by terrestrial laser scanning. The input of the method is a point cloud of a single tree scanned from multiple positions. The surface of the visible parts of the tree is robustly reconstructed by making a flexible cylinder model of the tree. The thorough quantitative model records also the topological branching structure. In this paper, every major step of the whole model reconstruction process, from the input to the finished model, is presented in detail. The model is constructed by a local approach in which the point cloud is covered with small sets corresponding to connected surface patches in the tree surface. The neighbor-relations and geometrical properties of these cover sets are used to reconstruct the details of the tree and, step by step, the whole tree. The point cloud and the sets are segmented into branches, after which the branches are modeled as collections of cylinders. From the model, the branching structure and size properties, such as volume and branch size distributions, for the whole tree or some of its parts, can be approximated. The approach is validated using both measured and modeled terrestrial laser scanner data from real trees and detailed 3D models. The results show that the method allows an easy extraction of various tree attributes from terrestrial or mobile laser scanning point clouds.

30 March 2012 in Remote Sensing
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Journal Article
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HKHarri Kaartinen
Harri Kaartinen
Juha HyyppäJuha Hyyppä
Juha Hyyppä
XYXiaowei Yu
Xiaowei Yu
Mikko VastarantaMikko Vastaranta
Mikko Vastaranta
HHHannu Hyyppä
Hannu Hyyppä
JWJee-Cheng Wu
Jee-Cheng Wu
The objective of the “Tree Extraction” project organized by EuroSDR (European Spatial data Research) and ISPRS (International Society of Photogrammetry and Remote Sensing) was to evaluate the quality, accuracy, and feasibility of automatic tree extraction methods, mainly based on laser scanner data. In the final report of the project, Kaartinen and Hyyppä (2008) reported a high variation in the quality of the published methods under boreal forest conditions and with varying laser point densities. This paper summarizes the findings beyond the final report after analyzing the results obtained in different tree height classes. Omission/Commission statistics as well as neighborhood relations are taken into account. Additionally, four automatic tree detection and extraction techniques were added to the test. Several methods in this experiment were superior to manual processing in the dominant, co-dominant and suppressed tree storeys. In general, as expected, the taller the tree, the better the location accuracy. The accuracy of tree height, after removing gross errors, was better than 0.5 m in all tree height classes with the best methods investigated in this experiment. For forest inventory, minimum curvature-based tree detection accompanied by point cloud-based cluster detection for suppressed trees is a solution that deserves attention in the future.

18 November 2015 in Remote Sensing
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Journal Article
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RNRoope Näsi
Roope Näsi
EHEija Honkavaara
Eija Honkavaara
Päivi Lyytikäinen-SaarenmaaPäivi Lyytikäinen-Saarenmaa
Päivi Lyytikäinen-Saarenmaa
MBMinna Blomqvist
Minna Blomqvist
PLPaula Litkey
Paula Litkey
MHMarkus Holopainen
Markus Holopainen
Low-cost, miniaturized hyperspectral imaging technology is becoming available for small unmanned aerial vehicle (UAV) platforms. This technology can be efficient in carrying out small-area inspections of anomalous reflectance characteristics of trees at a very high level of detail. Increased frequency and intensity of insect induced forest disturbance has established a new demand for effective methods suitable in mapping and monitoring tasks. In this investigation, a novel miniaturized hyperspectral frame imaging sensor operating in the wavelength range of 500–900 nm was used to identify mature Norway spruce (Picea abies L. Karst.) trees suffering from infestation, representing a different outbreak phase, by the European spruce bark beetle (Ips typographus L.). We developed a new processing method for analyzing spectral characteristic for high spatial resolution photogrammetric and hyperspectral images in forested environments, as well as for identifying individual anomalous trees. The dense point clouds, measured using image matching, enabled detection of single trees with an accuracy of 74.7%. We classified the trees into classes of healthy, infested and dead, and the results were promising. The best results for the overall accuracy were 76% (Cohen’s kappa 0.60), when using three color classes (healthy, infested, dead). For two color classes (healthy, dead), the best overall accuracy was 90% (kappa 0.80). The survey methodology based on high-resolution hyperspectral imaging will be of a high practical value for forest health management, indicating a status of bark beetle outbreak in time.

3 May 2012 in Remote Sensing
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Journal Article
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Juha HyyppäJuha Hyyppä
Juha Hyyppä
XYXiaowei Yu
Xiaowei Yu
HHHannu Hyyppä
Hannu Hyyppä
Mikko VastarantaMikko Vastaranta
Mikko Vastaranta
MHMarkus Holopainen
Markus Holopainen
Petteri AlhoPetteri Alho
Petteri Alho
We present two improvements for laser-based forest inventory. The first improvement is based on using last pulse data for tree detection. When trees overlap, the surface model between the trees corresponding to the first pulse stays high, whereas the corresponding model from the last pulse results in a drop in elevation, due to its better penetration between the trees. This drop in elevation can be used for separating trees. In a test carried out in Evo, Southern Finland, we used 292 forests plots consisting of more than 5,500 trees and airborne laser scanning (ALS) data comprised of 12.7 emitted laser pulses per m2. With last pulse data, an improvement of 6% for individual tree detection was obtained when compared to using first pulse data. The improvement increased with an increasing number of stems per plot and with decreasing diameter breast height (DBH). The results confirm that there is also substantial information for tree detection in last pulse data. The second improvement is based on the use of individual tree-based features in addition to the statistical point height metrics in area-based prediction of forest variables. The commonly-used ALS point height metrics and individual tree-based features were fused into the non-parametric estimation of forest variables. By using only four individual tree-based features, stem volume estimation improved when compared to the use of statistical point height metrics. For DBH estimation, the point height metrics and individual tree-based features complemented each other. Predictions were validated at plot level.

15 July 2014 in Forests
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MHMarkus Holopainen
Markus Holopainen
Mikko VastarantaMikko Vastaranta
Mikko Vastaranta
Juha HyyppäJuha Hyyppä
Juha Hyyppä
During the past decade in forest mapping and monitoring applications, the ability to acquire spatially accurate, 3D remote-sensing information by means of laser scanning, digital stereo imagery and radar imagery has been a major turning point. These 3D data sets that use single- or multi-temporal point clouds enable a wide range of applications when combined with other geoinformation and logging machine-measured data. New technologies enable precision forestry, which can be defined as a method to accurately determine characteristics of forests and treatments at stand, sub-stand or individual tree level. In precision forestry, even individual tree-level assessments can be used for simulation and optimization models of the forest management decision support system. At the moment, the forest industry in Finland is looking forward to next generation’s forest inventory techniques to improve the current wood procurement practices. Our vision is that in the future, the data solution for detailed forest management and wood procurement will be to use multi-source and -sensor information. In this communication, we review our recent findings and describe our future vision in precision forestry research in Finland.

8 February 2017 in Forests
Verified
Journal Article
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VLVille Luoma
Ville Luoma
NSNinni Saarinen
Ninni Saarinen
MWMichael Wulder
Michael Wulder
Joanne WhiteJoanne White
Joanne White
Mikko VastarantaMikko Vastaranta
Mikko Vastaranta
Juha HyyppäJuha Hyyppä
Juha Hyyppä
Forest resource information has a hierarchical structure: individual tree attributes are summed at the plot level and then in turn, plot-level estimates are used to derive stand or large-area estimates of forest resources. Due to this hierarchy, it is imperative that individual tree attributes are measured with accuracy and precision. With the widespread use of different measurement tools, it is also important to understand the expected degree of precision associated with these measurements. The most prevalent tree attributes measured in the field are tree species, stem diameter-at-breast-height (dbh), and tree height. For dbh and height, the most commonly used measuring devices are calipers and clinometers, respectively. The aim of our study was to characterize the precision of individual tree dbh and height measurements in boreal forest conditions when using calipers and clinometers. The data consisted of 319 sample trees at a study area in Evo, southern Finland. The sample trees were measured independently by four trained mensurationists. The standard deviation in tree dbh and height measurements was 0.3 cm (1.5%) and 0.5 m (2.9%), respectively. Precision was also assessed by tree species and tree size classes; however, there were no statistically significant differences between the mensurationists for dbh or height measurements. Our study offers insights into the expected precision of tree dbh and height as measured with the most commonly used devices. These results are important when using sample plot data in forest inventory applications, especially now, at a time when new tree attribute measurement techniques based on remote sensing are being developed and compared to the conventional caliper and clinometer measurements.