Ilias Gkikas

Dr. Ilias Gkikas

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 February 2022 in Nature Communications
Verified
Journal Article
Open access
PDF file
ELEirini Lionaki
Eirini Lionaki
IGIlias Gkikas
Ilias Gkikas
IDIoanna Daskalaki
Ioanna Daskalaki
MIMaria-Konstantina Ioannidi
Maria-Konstantina Ioannidi
Maria KlapaMaria Klapa
Maria Klapa
Nektarios TavernarakisNektarios Tavernarakis
Nektarios Tavernarakis
Sustained mitochondrial fitness relies on coordinated biogenesis and clearance. Both processes are regulated by constant targeting of proteins into the organelle. Thus, mitochondrial protein import sets the pace for mitochondrial abundance and function. However, our understanding of mitochondrial protein translocation as a regulator of longevity remains enigmatic. Here, we targeted the main protein import translocases and assessed their contribution to mitochondrial abundance and organismal physiology. We find that reduction in cellular mitochondrial load through mitochondrial protein import system suppression, referred to as MitoMISS, elicits a distinct longevity paradigm. We show that MitoMISS triggers the mitochondrial unfolded protein response, orchestrating an adaptive reprogramming of metabolism. Glycolysis and de novo serine biosynthesis are causatively linked to longevity, whilst mitochondrial chaperone induction is dispensable for lifespan extension. Our findings extent the pro-longevity role of UPRmt and provide insight, relevant to the metabolic alterations that promote or undermine survival and longevity.

10 July 2023 in The EMBO Journal
Verified
Journal Article
Open access
IDIoanna Daskalaki
Ioanna Daskalaki
MMMaria Markaki
Maria Markaki
IGIlias Gkikas
Ilias Gkikas
Nektarios TavernarakisNektarios Tavernarakis
Nektarios Tavernarakis
Mitochondria are central regulators of healthspan and lifespan, yet the intricate choreography of multiple, tightly controlled steps regulating mitochondrial biogenesis remains poorly understood. Here, we uncover a pivotal role for specific elements of the 5'-3' mRNA degradation pathway in the regulation of mitochondrial abundance and function. We find that the mRNA degradation and the poly-A tail deadenylase CCR4-NOT complexes form distinct foci in somatic Caenorhabditis elegans cells that physically and functionally associate with mitochondria. Components of these two multi-subunit complexes bind transcripts of nuclear-encoded mitochondria-targeted proteins to regulate mitochondrial biogenesis during ageing in an opposite manner. In addition, we show that balanced degradation and storage of mitochondria-targeted protein mRNAs are critical for mitochondrial homeostasis, stress resistance and longevity. Our findings reveal a multifaceted role of mRNA metabolism in mitochondrial biogenesis and show that fine-tuning of mRNA turnover and local translation control mitochondrial abundance and promote longevity in response to stress and during ageing.

29 January 2023 in BioEssays
Verified
Journal Article
Open access
ELEirini Lionaki
Eirini Lionaki
IGIlias Gkikas
Ilias Gkikas
Nektarios TavernarakisNektarios Tavernarakis
Nektarios Tavernarakis
Mitochondria hold diverse and pivotal roles in fundamental processes that govern cell survival, differentiation, and death, in addition to organismal growth, maintenance, and aging. The mitochondrial protein import system is a major contributor to mitochondrial biogenesis and lies at the crossroads between mitochondrial and cellular homeostasis. Recent findings highlight the mitochondrial protein import system as a signaling hub, receiving inputs from other cellular compartments and adjusting its function accordingly. Impairment of protein import, in a physiological, or disease context, elicits adaptive responses inside and outside mitochondria. In this review, we discuss recent developments, relevant to the mechanisms of mitochondrial protein import regulation, with a particular focus on quality control, proteostatic and metabolic cellular responses, triggered upon impairment of mitochondrial protein import.

Verified
Journal Article
Open access
PDF file
IGIlias Gkikas
Ilias Gkikas
IDIoanna Daskalaki
Ioanna Daskalaki
KKKonstantinos Kounakis
Konstantinos Kounakis
Nektarios TavernarakisNektarios Tavernarakis
Nektarios Tavernarakis
ELEirini Lionaki
Eirini Lionaki
SNARE proteins reside between opposing membranes and facilitate vesicle fusion, a physiological process ubiquitously required for secretion, endocytosis and autophagy. With age, neurosecretory SNARE activity drops and is pertinent to age-associated neurological disorders. Despite the importance of SNARE complex assembly and disassembly in membrane fusion, their diverse localization hinders the complete understanding of their function. Here, we revealed a subset of SNARE proteins, the syntaxin SYX-17, the synaptobrevins VAMP-7, SNB-6 and the tethering factor USO-1, to be either localized or in close proximity to mitochondria, in vivo. We term them mitoSNAREs and show that animals deficient in mitoSNAREs exhibit increased mitochondria mass and accumulation of autophagosomes. The SNARE disassembly factor NSF-1 seems to be required for the effects of mitoSNARE depletion. Moreover, we find mitoSNAREs to be indispensable for normal aging in both neuronal and non-neuronal tissues. Overall, we uncover a previously unrecognized subset of SNAREs that localize to mitochondria and propose a role of mitoSNARE assembly and disassembly factors in basal autophagy regulation and aging.

21 March 2025 in Computers in Biology and Medicine
Verified
Journal Article
Open access
Pablo Layana CastroPablo Layana Castro
Pablo Layana Castro
KKKonstantinos Kounakis
Konstantinos Kounakis
AGAntonio García Garví
Antonio García Garví
IGIlias Gkikas
Ilias Gkikas
ITIoannis Tsiamantas
Ioannis Tsiamantas
ASAntonio-José Sánchez-Salmerón
Antonio-José Sánchez-Salmerón
Caenorhabditis elegans is a great model for exploring organismal, cellular, and subcellular biology through optical and fluorescence microscopy, with its research applications steadily expanding. However, manual processing of numerous microscopic images is prone to errors and demands significant labor due to worms tendency to touch or cluster with each other. Here, we present a new system for segmenting whole-body instances of Caenorhabditis elegans in microscopic images (referred to as SegElegans), employing a combination of neural network architecture and conventional image processing techniques. Our method effectively overcomes previous challenges and resolves many instances of contact and overlap between worms in highly populated images in a timely manner. The results obtained show an average Intersection over Union value of 96.3% per worm and an average improvement of 6% over other existing methods for automated analysis of worm images. SegElegns is a user-friendly application for Caenorhabditis elegans segmentation that will benefit whole-worm phenotypic screenings essential for studying development, behavior, aging, and disease.

6 May 2026 in bioRxiv
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Preprint
Open access
PDF file
AAAntonino Asaro
Antonino Asaro
GJGregor Pulikkotti Jose
Gregor Pulikkotti Jose
IGIlias Gkikas
Ilias Gkikas
SSSarah Salame
Sarah Salame
PPPauline Perné
Pauline Perné
THTakeshi Harayama
Takeshi Harayama
SUMMARY: Ferroptosis is a form of cell death driven by iron-dependent lipid peroxidation, with specific lipid species playing key roles in modulating susceptibility. Among these, ether lipids have shown conflicting effects, being linked to both protection and sensitization. Here, we dissect the relationship between lipid structure and ferroptosis sensitivity and explain how ether lipids exert context-dependent effects. Ether lipids can promote ferroptosis through a metabolic bias towards the accumulation of polyunsaturated acyl chains and ethanolamine head groups, whereas this pro-ferroptotic tendency is counterbalanced by the anti-ferroptotic vinyl ether moiety introduced by plasmanylethanolamine desaturase 1. We show that this protective effect is critical for preventing ferroptosis in hiPSC-derived neurons, which accumulate otherwise pro-ferroptotic ether lipids during differentiation. This effect is not solely due to its antioxidant properties but also stems from the reprogramming of mitochondrial respiration. The lack of vinyl ether bonds leads to multiple mitochondrial defects, including increased mitochondrial reactive oxygen species (ROS), lower membrane potential, and abnormal cristae structures. These findings indicate that vinyl ether bonds in ether lipids offer dual ferroptosis resistance by scavenging ROS and minimizing its production at the mitochondrial level. The disruption of this system in Caenorhabditis elegans leads to iron-induced death and impaired motility. Thus, our study reveals ether lipid structural remodeling as a key regulator of ferroptosis sensitivity in neurons.