The olive tree (Olea europaea L.) is the most important oil-producing crop of the Mediterranean basin. However, although plant protection measures are regularly applied, disease outbreaks represent an obstacle towards the further development of the sector. Therefore, there is an urge for the improvement of plant protection strategies based on information acquired by the implementation of advanced methodologies. Recently, heavy fungal infections of olive fruits have been recorded in major olive-producing areas of Greece causing devastating yield losses. Thus, initially, we have undertaken the task to identify their causal agent(s) and assess their pathogenicity and sensitivity to fungicides. The disease was identified as the olive anthracnose, and although Colletotrichum gloeosporioides and Colletotrichum acutatum species complexes are the two major causes, the obtained results confirmed that in Southern Greece the latter is the main causal agent. The obtained isolates were grouped into eight morphotypes based on their phenotypes, which differ in their sensitivities to fungicides and pathogenicity. The triazoles difenoconazole and tebuconazole were more toxic than the strobilurins being tested. Furthermore, a GC/EI/MS metabolomics model was developed for the robust chemotaxonomy of the isolates and the dissection of differences between their endo-metabolomes, which could explain the obtained phenotypes. The corresponding metabolites-biomarkers for the discrimination between morphotypes were discovered, with the most important ones being the amino acids L-tyrosine, L-phenylalanine, and L-proline, the disaccharide α,α-trehalose, and the phytotoxic pathogenesis-related metabolite hydroxyphenylacetate. These metabolites play important roles in fungal metabolism, pathogenesis, and stress responses. The study adds critical information that could be further exploited to combat olive anthracnose through its monitoring and the design of improved, customized plant protection strategies. Also, results suggest the necessity for the comprehensive mapping of the C. acutatum species complex morphotypes in order to avoid issues such as the development of fungicide-resistant genotypes.

Soilless crop production is spread worldwide. It is a cultivating technique that enhances yield quality and quantity, thus contributing to both food safety and food security. However, in closed-loop soilless crops, the risk of spreading soil-borne pathogens through the recycled nutrient solution makes the establishment of a disinfection strategy necessary. In the current study, sodium hypochlorite was applied to the recycled nutrient solution as a chemical disinfectant to assess its impact on plant growth, leaf gas exchange, fruit yield, tissue mineral composition, and possible accumulation of chlorate and perchlorate residues in tomato fruits. The application of 2.5, 5, and 7.5 mg L⁻¹ of chlorine three times at fortnightly intervals during the cropping period had no impact on plant growth or gas exchange parameters. Furthermore, the application of 2.5 mg L⁻¹ of chlorine led to a significant increase in the total production of marketable fruits (total fruit weight per plant). No consistent differences in nutrient concentrations were recorded between the treatments. Moreover, neither chlorate nor perchlorate residues were detected in tomato fruits, even though chlorate residues were present in the nutrient solution. Therefore, the obtained tomatoes were safe for consumption. Further research is needed to test the application of chlorine in combination with crop inoculation with pathogens to test the efficiency of chlorine as a disinfectant in soilless nutrient solutions.