Javier Soto Pérez-Olivares

Dr. Javier Soto Pérez-Olivares

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 November 2022 in BMC Medical Research Methodology
Verified
Journal Article
Open access
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MPMaria N. Plana
Maria N. Plana
IAIngrid Arevalo-Rodriguez
Ingrid Arevalo-Rodriguez
SFSilvia Fernández-García
Silvia Fernández-García
JPJavier Soto Pérez-Olivares
Javier Soto Pérez-Olivares
Martin FabregateMartin Fabregate
Martin Fabregate
JZJavier Zamora
Javier Zamora
Background: Diagnostic evidence of the accuracy of a test for identifying a target condition of interest can be estimated using systematic approaches following standardized methodologies. Statistical methods for the meta-analysis of diagnostic test accuracy (DTA) studies are relatively complex, presenting a challenge for reviewers without extensive statistical expertise. In 2006, we developed Meta-DiSc, a free user-friendly software to perform test accuracy meta-analysis. This statistical program is now widely used for performing DTA meta-analyses. We aimed to build a new version of the Meta-DiSc software to include statistical methods based on hierarchical models and an enhanced web-based interface to improve user experience. Results: In this article, we present the updated version, Meta-DiSc 2.0, a web-based application developed using the R Shiny package. This new version implements recommended state-of-the-art statistical models to overcome the limitations of the statistical approaches included in the previous version. Meta-DiSc 2.0 performs statistical analyses of DTA reviews using a bivariate random effects model. The application offers a thorough analysis of heterogeneity, calculating logit variance estimates of sensitivity and specificity, the bivariate I-squared, the area of the 95% prediction ellipse, and the median odds ratios for sensitivity and specificity, and facilitating subgroup and meta-regression analyses. Furthermore, univariate random effects models can be applied to meta-analyses with few studies or with non-convergent bivariate models. The application interface has an intuitive design set out in four main menus: file upload; graphical description (forest and ROC plane plots); meta-analysis (pooling of sensitivity and specificity, estimation of likelihood ratios and diagnostic odds ratio, sROC curve); and summary of findings (impact of test through downstream consequences in a hypothetical population with a given prevalence). All computational algorithms have been validated in several real datasets by comparing results obtained with STATA/SAS and MetaDTA packages. Conclusion: We have developed and validated an updated version of the Meta-DiSc software that is more accessible and statistically sound. The web application is freely available at www.metadisc.es.

28 May 2024 in Applied Sciences
Verified
Journal Article
Open access
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DVDaniel Vallejo-Cendrero
Daniel Vallejo-Cendrero
JMJuan Manuel Molina-Maza
Juan Manuel Molina-Maza
BRBlanca Rodriguez-Gonzalez
Blanca Rodriguez-Gonzalez
DVDavid Viar-Hernandez
David Viar-Hernandez
BRBorja Rodriguez-Vila
Borja Rodriguez-Vila
ATAngel Torrado-Carvajal
Angel Torrado-Carvajal
In the field of knee imaging, the incorporation of MR-based pseudo-CT synthesis holds the potential to mitigate the need for separate CT scans, simplifying workflows, enhancing patient comfort, and reducing radiation exposure. In this work, we present a novel DL framework, grounded in the development of the Cycle-Consistent Generative Adversarial Network (CycleGAN) method, tailored specifically for the synthesis of pseudo-CT images in knee imaging to surmount the limitations of current methods. Upon visually examining the outcomes, it is evident that the synthesized pseudo-CTs show an excellent quality and high robustness. Despite the limited dataset employed, the method is able to capture the particularities of the bone contours in the resulting image. The experimental Mean Absolute Error (MAE), Peak Signal-to-Noise Ratio (PSNR), Structural Similarity Index Measure (SSIM), Zero-Normalized Cross Correlation (ZNCC), Mutual Information (MI), Relative Change (RC), and absolute Relative Change (|RC|) report values of 30.4638 ± 7.4770, 28.1168 ± 1.5245, 0.9230 ± 0.0217, 0.9807 ± 0.0071, 0.8548 ± 0.1019, 0.0055 ± 0.0265, and 0.0302 ± 0.0218 (median ± median absolute deviation), respectively. The voxel-by-voxel correlation plot shows an excellent correlation between pseudo-CT and ground-truth CT Hounsfield units (m = 0.9785; adjusted R2 = 0.9988; ρ = 0.9849; p < 0.001). The Bland–Altman plot shows that the average of the differences is low ((HUCT−HUpseudo−CT = 0.7199 ± 35.2490; 95% confidence interval [−68.3681, 69.8079]). This study represents the first reported effort in the field of MR-based knee pseudo-CT synthesis, shedding light to significantly advance the field of knee imaging.

1 September 2020
Verified
Conference Paper
Closed access
FSFranck Sicard
Franck Sicard
EHEstelle Hotellier
Estelle Hotellier
JPJavier Soto Pérez-Olivares
Javier Soto Pérez-Olivares
EZEric Zamai
Eric Zamai
Industrial Control Systems (ICS) are present in many fields, sometimes critical infrastructures, and perform complex functions to carry out their missions. However, since the beginning of the century, they have been the target of increasingly specific attacks whose consequences can be catastrophic. Thus, new security approaches at the border between IT security and safety have emerged to detect malicious activities in ICS. S.A.F.E. (Security Approach based on Filter Execution) is one of them as it enables the order analysis issued by the Programmable Logic Controller (PLC) based on behavioral models. Indicators are used to trigger automation-oriented detection mechanisms. One of these indicators, the distance, measures the minimal number of orders from the PLC to apply from the current state before reaching a prohibited state. This computation is based on the Dijkstra algorithm which is time consuming and complex. This paper presents a comparative study of different algorithms for optimizing distance computation in a cybersecurity context.

5 October 2024 in International Journal of Medical Informatics
Verified
Journal Article
Closed access
RHRodrigo Martín Gómez Del Moral Herranz
Rodrigo Martín Gómez Del Moral Herranz
MRMaría Jesús López Rodríguez
María Jesús López Rodríguez
ASAlexander P. Seiffert
Alexander P. Seiffert
JPJavier Soto Pérez-Olivares
Javier Soto Pérez-Olivares
MAMiguel Chiva De Agustín
Miguel Chiva De Agustín
PSPatricia Sánchez-González
Patricia Sánchez-González

30 September 2024 in Journal of Renal Nutrition
Verified
Journal Article
Closed access
MMMiriam Menacho-Roman
Miriam Menacho-Roman
MFMartin Fabregate-Fuente
Martin Fabregate-Fuente
LCLaura Caja-Guayerbas
Laura Caja-Guayerbas
SJSergio Jiménez-Sánchez
Sergio Jiménez-Sánchez
JPJavier Soto Pérez-Olivares
Javier Soto Pérez-Olivares
IAIgnacio Arribas-Gómez
Ignacio Arribas-Gómez

19 April 2023 in Journal of Clinical Medicine
Verified
Journal Article
Open access
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CCCecilia Suárez Carantoña
Cecilia Suárez Carantoña
Carlos EscobarCarlos Escobar
Carlos Escobar
Martin FabregateMartin Fabregate
Martin Fabregate
MRMónica A. López Rodríguez
Mónica A. López Rodríguez
NBNuria Bara-Ledesma
Nuria Bara-Ledesma
LMLuis Manzano
Luis Manzano
Objective: We aimed to test the non-inferiority of oral versus intravenous hydration in the incidence of contrast-associated acute kidney injury (CA-AKI) in elderly outpatients undergoing a contrast-enhanced computed tomography (CE-CT) scan. Methods: PNIC-Na (NCT03476460) is a phase-2, single-center, randomized, open-label, non-inferiority trial. We included outpatients undergoing a CE-CT scan, >65 years having at least one risk factor for CA-AKI, such as diabetes, heart failure, or an estimated glomerular filtration rate (eGFR) of 30–59 mL/min/1.73 m². Participants were randomized (1:1) to oral sodium-chloride capsules or intravenous hydration. The primary outcome was an increase in serum creatinine >0.3 mg/dL or a reduction in eGFR >25% within 48 h. The non-inferiority margin was set at 5%. Results: A total of 271 subjects (mean age 74 years, 66% male) were randomized, and 252 were considered for the main analysis (per-protocol). A total of 123 received oral hydration and 129 intravenous. CA-AKI occurred in 9 (3.6%) of 252 patients and 5/123 (4.1%) in the oral-hydration group vs. 4/129 (3.1%) in the intravenous-hydration group. The absolute difference between the groups was 1.0% (95% CI −4.8% to 7.0%), and the upper limit of the 95% CI exceeded the pre-established non-inferiority margin. No major safety concerns were observed. Conclusion: The incidence of CA-AKI was lower than expected. Although both regimens showed similar incidences of CA-AKI, the non-inferiority was not shown.