Borja Rodriguez-Vila

Dr. Borja Rodriguez-Vila

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
15 December 2021 in Electronics
Verified
Journal Article
Open access
PDF file
EAEduardo Alcaín
Eduardo Alcaín
PFPedro Fernández
Pedro Fernández
RNRubén Nieto
Rubén Nieto
AMAntonio S. Montemayor
Antonio S. Montemayor
JVJaime Vilas
Jaime Vilas
ATAngel Torrado-Carvajal
Angel Torrado-Carvajal
Medical imaging is considered one of the most important advances in the history of medicine and has become an essential part of the diagnosis and treatment of patients. Earlier prediction and treatment have been driving the acquisition of higher image resolutions as well as the fusion of different modalities, raising the need for sophisticated hardware and software systems for medical image registration, storage, analysis, and processing. In this scenario and given the new clinical pipelines and the huge clinical burden of hospitals, these systems are often required to provide both highly accurate and real-time processing of large amounts of imaging data. Additionally, lowering the prices of each part of imaging equipment, as well as its development and implementation, and increasing their lifespan is crucial to minimize the cost and lead to more accessible healthcare. This paper focuses on the evolution and the application of different hardware architectures (namely, CPU, GPU, DSP, FPGA, and ASIC) in medical imaging through various specific examples and discussing different options depending on the specific application. The main purpose is to provide a general introduction to hardware acceleration techniques for medical imaging researchers and developers who need to accelerate their implementations.

3 April 2024 in Medical Physics
Verified
Journal Article
Open access
DVDavid Viar-Hernandez
David Viar-Hernandez
JMJuan Manuel Molina‐Maza
Juan Manuel Molina‐Maza
JVJuan Antonio Vera-Sánchez
Juan Antonio Vera-Sánchez
JPJuan Maria Perez‐Moreno
Juan Maria Perez‐Moreno
AMAlejandro Mazal
Alejandro Mazal
ATAngel Torrado-Carvajal
Angel Torrado-Carvajal
Background: Proton therapy is a form of radiotherapy commonly used to treat various cancers. Due to its high conformality, minor variations in patient anatomy can lead to significant alterations in dose distribution, making adaptation crucial. While cone‐beam computed tomography (CBCT) is a well‐established technique for adaptive radiation therapy (ART), it cannot be directly used for adaptive proton therapy (APT) treatments because the stopping power ratio (SPR) cannot be estimated from CBCT images.Purpose: To address this limitation, Deep Learning methods have been suggested for converting pseudo‐CT (pCT) images from CBCT images. In spite of convolutional neural networks (CNNs) have shown consistent improvement in pCT literature, there is still a need for further enhancements to make them suitable for clinical applications.Methods: The authors introduce the 3D vision transformer (ViT) block, studying its performance at various stages of the proposed architectures. Additionally, they conduct a retrospective analysis of a dataset that includes 259 image pairs from 59 patients who underwent treatment for head and neck cancer. The dataset is partitioned into 80% for training, 10% for validation, and 10% for testing purposes.Results: The SPR maps obtained from the pCT using the proposed method present an absolute relative error of less than 5% from those computed from the planning CT, thus improving the results of CBCT.Conclusions: We introduce an enhanced ViT3D architecture for pCT image generation from CBCT images, reducing SPR error within clinical margins for APT workflows. The new method minimizes bias compared to CT‐based SPR estimation and dose calculation, signaling a promising direction for future research in this field. However, further research is needed to assess the robustness and generalizability across different medical imaging applications.

18 October 2024 in Physics in Medicine & Biology
Verified
Journal Article
Open access
DVDavid Viar-Hernandez
David Viar-Hernandez
JMJuan Manuel Molina-Maza
Juan Manuel Molina-Maza
SPShaoyan Pan
Shaoyan Pan
ESElahheh Salari
Elahheh Salari
CCChih-Wei Chang
Chih-Wei Chang
Xiaofeng YangXiaofeng Yang
Xiaofeng Yang
Background. Adaptive radiotherapy (ART) requires precise tissue characterization to optimize treatment plans and enhance the efficacy of radiation delivery while minimizing exposure to organs at risk. Traditional imaging techniques such as cone beam computed tomography (CBCT) used in ART settings often lack the resolution and detail necessary for accurate dosimetry, especially in proton therapy. Purpose. This study aims to enhance ART by introducing an innovative approach that synthesizes dual-energy computed tomography (DECT) images from CBCT scans using a novel 3D conditional denoising diffusion probabilistic model (DDPM) multi-decoder. This method seeks to improve dose calculations in ART planning, enhancing tissue characterization. Methods. We utilized a paired CBCT-DECT dataset from 54 head and neck cancer patients to train and validate our DDPM model. The model employs a multi-decoder Swin-UNET architecture that synthesizes high-resolution DECT images by progressively reducing noise and artifacts in CBCT scans through a controlled diffusion process. Results. The proposed method demonstrated superior performance in synthesizing DECT images (High DECT MAE 39.582 ± 0.855 and Low DECT MAE 48.540± 1.833) with significantly enhanced signal-to-noise ratio and reduced artifacts compared to traditional GAN-based methods. It showed marked improvements in tissue characterization and anatomical structure similarity, critical for precise proton and radiation therapy planning. Conclusions. This research has opened a new avenue in CBCT-CT synthesis for ART/APT by generating DECT images using an enhanced DDPM approach. The demonstrated similarity between the synthesized DECT images and ground truth images suggests that these synthetic volumes can be used for accurate dose calculations, leading to better adaptation in treatment planning.

7 January 2023 in Journal of Orthopaedic Research
Verified
Journal Article
Closed access
BRBorja Rodriguez-Vila
Borja Rodriguez-Vila
VGVera Gonzalez‐Hospital
Vera Gonzalez‐Hospital
Enrique PuertasEnrique Puertas
Enrique Puertas
JBJuan‐Jose Beunza
Juan‐Jose Beunza
David M. PierceDavid M. Pierce
David M. Pierce

20 March 2025 in Journal of Orthopaedic Research
Verified
Journal Article
Closed access
KSKosar Safari
Kosar Safari
BRBorja Rodriguez-Vila
Borja Rodriguez-Vila
David M. PierceDavid M. Pierce
David M. Pierce

28 May 2024 in Applied Sciences
Verified
Journal Article
Open access
PDF file
DVDaniel Vallejo-Cendrero
Daniel Vallejo-Cendrero
JMJuan Manuel Molina-Maza
Juan Manuel Molina-Maza
BRBlanca Rodriguez-Gonzalez
Blanca Rodriguez-Gonzalez
DVDavid Viar-Hernandez
David Viar-Hernandez
BRBorja Rodriguez-Vila
Borja Rodriguez-Vila
ATAngel Torrado-Carvajal
Angel Torrado-Carvajal
In the field of knee imaging, the incorporation of MR-based pseudo-CT synthesis holds the potential to mitigate the need for separate CT scans, simplifying workflows, enhancing patient comfort, and reducing radiation exposure. In this work, we present a novel DL framework, grounded in the development of the Cycle-Consistent Generative Adversarial Network (CycleGAN) method, tailored specifically for the synthesis of pseudo-CT images in knee imaging to surmount the limitations of current methods. Upon visually examining the outcomes, it is evident that the synthesized pseudo-CTs show an excellent quality and high robustness. Despite the limited dataset employed, the method is able to capture the particularities of the bone contours in the resulting image. The experimental Mean Absolute Error (MAE), Peak Signal-to-Noise Ratio (PSNR), Structural Similarity Index Measure (SSIM), Zero-Normalized Cross Correlation (ZNCC), Mutual Information (MI), Relative Change (RC), and absolute Relative Change (|RC|) report values of 30.4638 ± 7.4770, 28.1168 ± 1.5245, 0.9230 ± 0.0217, 0.9807 ± 0.0071, 0.8548 ± 0.1019, 0.0055 ± 0.0265, and 0.0302 ± 0.0218 (median ± median absolute deviation), respectively. The voxel-by-voxel correlation plot shows an excellent correlation between pseudo-CT and ground-truth CT Hounsfield units (m = 0.9785; adjusted R2 = 0.9988; ρ = 0.9849; p < 0.001). The Bland–Altman plot shows that the average of the differences is low ((HUCT−HUpseudo−CT = 0.7199 ± 35.2490; 95% confidence interval [−68.3681, 69.8079]). This study represents the first reported effort in the field of MR-based knee pseudo-CT synthesis, shedding light to significantly advance the field of knee imaging.