Microbial fuel cells (MFCs) are environmentally friendly energy converters that use electrochemically active bacteria (EAB) as catalysts to break down organic matter while producing bioelectricity. Traditionally, MFC research has relied on simple organic substrates, such as acetate, glucose, sucrose, butyrate, and glutamate, the production of which involves energy-intensive, CO₂-dependent processes and chemically aggressive methods. In contrast, nonconventional waste streams offer a more sustainable alternative as feedstocks, aligning with zero-waste and regenerative agricultural principles. This review highlights the potential of nonconventional organic wastes, such as fruit and vegetable wastes, raw human and livestock urine, and farm manure, as globally available and low-cost substrates for MFCs, particularly in household and farming applications at small-scale waste levels. Furthermore, complex waste sources, including hydrocarbon-contaminated effluents and lignin-rich industrial wood waste, which present unique challenges and opportunities for their integration into MFC systems, were examined in depth. The findings of this review reveal that MFCs utilizing nonconventional substrates can achieve power outputs comparable to traditional substrates (e.g., 8314 mW m⁻²–25,195 mW m⁻² for crude sugarcane effluent and raw distillery effluent, respectively) and even superior to them, reaching up to 88,990 mW m⁻² in MFCs utilizing vegetable waste. Additionally, MFCs utilizing hydrocarbon-containing petroleum sediment achieved one of the highest reported maximum power densities of 50,570 mW m⁻². By integrating diverse organic waste streams, MFCs can contribute to carbon-neutral energy generation and sustainable waste management practices.

In this study, a microbial fuel cell was integrated into a hydroponic system (MFC-Hyp) using a ceramic membrane as a separator. The MFC-Hyp is a passive system that allows the transport of nutrients from wastewater in the microbial fuel cell (MFC) to water in the hydroponic vessel (Hyp) through a ceramic membrane separator, with no external energy input. The performance of this system was examined using potato-process wastewater as a source of energy and nutrients (K, P, N) and garlic chives (Allium tuberosum) as a hydroponic plant. The results showed that based on dry weight, the leaves of Allium tuberosum grew 142% more in the MFC-Hyp than those of the plant in the Hyp without the MFC, in a 49-day run. The mass fluxes of K, P, and NO₃⁻-N from the MFC to the Hyp through the ceramic membrane were 4.18 ± 0.70, 3.78 ± 1.90, and 2.04 ± 0.98 µg s⁻¹m⁻², respectively. It was apparent that the diffusion of nutrients from wastewater in the MFC enhanced the plant growth in the Hyp. The MFC-Hyp in the presence of A. tuberosum produced the maximum power density of 130.2 ± 45.4 mW m⁻². The findings of this study suggest that the MFC-Hyp system has great potential to be a “carbon-neutral” technology that could be transformed into an important part of a diversified worldwide energy–water–food supply system.