Sofia Feoktistova

Mrs. Sofia Feoktistova

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 November 2024 in Cells
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Journal Article
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VAValentin Artemyev
Valentin Artemyev
AGAnna Gubaeva
Anna Gubaeva
APAnastasiia Iurevna Paremskaia
Anastasiia Iurevna Paremskaia
ADAmina Dzhioeva
Amina Dzhioeva
ADAndrei A Deviatkin
Andrei A Deviatkin
PVPavel Volchkov
Pavel Volchkov
Gene therapy is a promising approach to the treatment of various inherited diseases, but its development is complicated by a number of limitations of the natural promoters used. The currently used strong ubiquitous natural promoters do not allow for the specificity of expression, while natural tissue-specific promoters have lowactivity. These limitations of natural promoters can be addressed by creating new synthetic promoters that achieve high levels of tissue-specific target gene expression. This review discusses recent advances in the development of synthetic promoters that provide a more precise regulation of gene expression. Approaches to the design of synthetic promoters are reviewed, including manual design and bioinformatic methods using machine learning. Examples of successful applications of synthetic promoters in the therapy of hereditary diseases and cancer are presented, as well as prospects for their clinical use.

11 January 2022 in Trends in Biotechnology
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Journal Article
Closed access
Vasiliy ReshetnikovVasiliy Reshetnikov
Vasiliy Reshetnikov
SSSviatlana Smolskaya
Sviatlana Smolskaya
SFSofia G. Feoktistova
Sofia G. Feoktistova
VVVladislav Verkhusha
Vladislav Verkhusha

Verified
Journal Article
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ASAnastasiia Soroka
Anastasiia Soroka
SFSofya G. Feoktistova
Sofya G. Feoktistova
OMOlga Mityaeva
Olga Mityaeva
PVPavel Volchkov
Pavel Volchkov
In contrast to the standard enzyme-replacement therapy, administered from once per 7–14 days to 2–3 times a week in patients with severe hemophilia B, as a result of a single injection, gene therapy can restore F9 gene expression and maintain it for a prolonged time. In clinical research, the approach of delivering a functional copy of a gene using adeno-associated viral (AAV) vectors is widely used. The scientific community is actively researching possible modifications to improve delivery efficiency and expression. In preclinical studies, the possibility of genome editing using CRISPR/Cas9 technology for the treatment of hemophilia B is also being actively studied.

20 January 2023 in Vaccines
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Journal Article
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ADAndrei A Deviatkin
Andrei A Deviatkin
RSRuslan Simonov
Ruslan Simonov
KTKseniya Trutneva
Kseniya Trutneva
AMAnna Maznina
Anna Maznina
ASAnastasiia Soroka
Anastasiia Soroka
PVPavel Volchkov
Pavel Volchkov
Recently, the mRNA platform has become the method of choice in vaccine development to find new ways to fight infectious diseases. However, this approach has shortcomings, namely that mRNA vaccines require special storage conditions, which makes them less accessible. This instability is due to the fact that the five-prime and three-prime ends of the mRNA are a substrate for the ubiquitous exoribonucleases. To address the problem, circular mRNAs have been proposed for transgene delivery as they lack these ends. Notably, circular RNAs do not have a capped five-prime end, which makes it impossible to initiate translation canonically. In this review, we summarize the current knowledge on cap-independent translation initiation methods and discuss which approaches might be most effective in developing vaccines and other biotechnological products based on circular mRNAs.

9 February 2021 in Glycobiology
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SSSodbo Sharapov
Sodbo Sharapov
ASAlexandra S Shadrina
Alexandra S Shadrina
YTYakov Tsepilov
Yakov Tsepilov
EEElizaveta Evgenevna Elgaeva
Elizaveta Evgenevna Elgaeva
ETEvgeny S Tiys
Evgeny S Tiys
YAYurii S Aulchenko
Yurii S Aulchenko
Human protein glycosylation is a complex process, and its in vivo regulation is poorly understood. Changes in glycosylation patterns are associated with many human diseases and conditions. Understanding the biological determinants of protein glycome provides a basis for future diagnostic and therapeutic applications. Genome-wide association studies (GWAS) allow to study biology via a hypothesis-free search of loci and genetic variants associated with a trait of interest. Sixteen loci were identified by three previous GWAS of human plasma proteome N-glycosylation. However, the possibility that some of these loci are false positives needs to be eliminated by replication studies, which have been limited so far. Here, we use the largest set of samples so far (4802 individuals) to replicate the previously identified loci. For all but one locus, the expected replication power exceeded 95%. Of the 16 loci reported previously, 15 were replicated in our study. For the remaining locus (near the KREMEN1 gene), the replication power was low, and hence, replication results were inconclusive. The very high replication rate highlights the general robustness of the GWAS findings as well as the high standards adopted by the community that studies genetic regulation of protein glycosylation. The 15 replicated loci present a good target for further functional studies. Among these, eight loci contain genes encoding glycosyltransferases: MGAT5, B3GAT1, FUT8, FUT6, ST6GAL1, B4GALT1, ST3GAL4 and MGAT3. The remaining seven loci offer starting points for further functional follow-up investigation into molecules and mechanisms that regulate human protein N-glycosylation in vivo.

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NBNataliia A. Bobrova
Nataliia A. Bobrova
DLD. I. Lyubimova
D. I. Lyubimova
DMDaria Mishina
Daria Mishina
V(Victoria Lobanova (Kakaulina)
Victoria Lobanova (Kakaulina)
SVS. I. Valieva
S. I. Valieva
PVPavel Volchkov
Pavel Volchkov
Phenylketonuria (PKU) is a common inherited metabolic disorder characterised by impaired metabolism of the amino acid phenylalanine. The disease results from a mutation in the phenylalanine hydroxylase (PAH) enzyme, which converts phenylalanine (Phe) into tyrosine (Tyr). The absence or inactivity of this enzyme results in significantly elevated levels of Phe in the blood, which can lead to severe neurological conditions, including intellectual disability, epilepsy, and other developmental disorders. Since its discovery, animal models have played a crucial role for understanding the pathophysiology of PKU, as well as providing recognisable proof of targets and surveying new remedial specialists and in vivo medicines. In the present study, we conducted a comprehensive review of the experimental and non-experimental animal models employed for phenylketonuria and its associated complications.