Emily McLay

Dr. Emily McLay

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 October 2020 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
EMEmily McLay
Emily McLay
APAna Clara Pontaroli
Ana Clara Pontaroli
JWJason J. Wargent
Jason J. Wargent
Biotrophic disease is one of the largest causes of decreased yield in agriculture. While exposure to ultraviolet B (UV-B) light (280–320 nm) has been previously observed to reduce plant susceptibility to disease, there is still a paucity of information regarding underlying biological mechanisms. In addition, recent advances in UV-LED technology raise the prospect of UV light treatments in agriculture which are practical and efficient. Here, we characterized the capability of UV-B LED pre-treatments to reduce susceptibility of a range of lettuce (Lactuca sativa) cultivars to downy mildew disease caused by the obligate biotroph Bremia lactucae. Innate cultivar susceptibility level did not seem to influence the benefit of a UV-B induced disease reduction with similar reductions as a percentage of the control observed (54–62% decrease in conidia count) across all susceptible cultivars. UV-B-induced reductions to conidia counts were sufficient to significantly reduce the infectivity of the diseased plant. Secondary infections caused by UV-B pre-treated plants exhibited yet further (67%) reduced disease severity. UV-B-induced flavonoids may in part mediate this reduced disease severity phenotype, as B. lactucae conidia counts of lettuce plants negatively correlated with flavonoid levels in a UV-B-dependent manner (r = −0.81). Liquid chromatography–mass spectrometry (LC-MS) was used to identify metabolic features which contribute to this correlation and, of these, quercetin 3-O-(6”-O-malonyl)-b-D-glucoside had the strongest negative correlation with B. lactucae conidia count (r = −0.68). When quercetin 3-O-(6”-O-malonyl)-b-D-glucoside was directly infiltrated into lettuce leaves, with those leaves subsequently infected, the B. lactucae conidia count was reduced (25–39%) in two susceptible lettuce cultivars. We conclude that UV-B induced phenolics, in particular quercetin flavonoids, may act as phytoanticipins to limit the establishment of biotrophic pathogens thus delaying or reducing their sporulation as measured by conidia count. These findings highlight the opportunity for UV-B morphogenesis to be exploited through the application of UV-LED technology, as part of the development of next-generation, sustainable disease control tools.

16 April 2024 in Remote Sensing
Verified
Journal Article
Open access
PDF file
MWMichael S. Stuart Watt
Michael S. Stuart Watt
AHAndrew Holdaway
Andrew Holdaway
PWPete Watt
Pete Watt
GPGrant Pearse
Grant Pearse
MPMelanie Elizabeth Palmer
Melanie Elizabeth Palmer
SFStuart Fraser
Stuart Fraser
Red needle cast (RNC), mainly caused by Phytophthora pluvialis, is a very damaging disease of the widely grown species radiata pine within New Zealand. Using a combination of satellite imagery and weather data, a novel methodology was developed to pre-visually predict the incidence of RNC on radiata pine within the Gisborne region of New Zealand over a five-year period from 2019 to 2023. Sentinel-2 satellite imagery was used to classify areas within the region as being disease-free or showing RNC expression from the difference in the red/green index (R/Gdiff) during a disease-free time of the year and the time of maximum disease expression in the upper canopy (early spring–September). Within these two classes, 1976 plots were extracted, and a classification model was used to predict disease incidence from mean monthly weather data for key variables during the 11 months prior to disease expression. The variables in the final random forest model included solar radiation, relative humidity, rainfall, and the maximum air temperature recorded during mid–late summer, which provided a pre-visual prediction of the disease 7–8 months before its peak expression. Using a hold-out test dataset, the final random forest model had an accuracy of 89% and an F1 score of 0.89. This approach can be used to mitigate the impact of RNC by focusing on early surveillance and treatment measures.

1 October 2025 in Phytopathology®
Verified
Journal Article
Closed access
AMAlexey Mikaberidze
Alexey Mikaberidze
CCC.D. Cruz
C.D. Cruz
AZAyalsew Zerihun
Ayalsew Zerihun
AAAbel Andree Barreto Alcantara
Abel Andree Barreto Alcantara
PBPieter S. A. Beck
Pieter S. A. Beck
NCNik Cunniffe
Nik Cunniffe
Plant diseases impair the yield and quality of crops and threaten the health of natural plant communities. Epidemiological models can predict disease and inform management. However, data are scarce, because traditional methods to measure plant diseases are resource intensive, which often limits model performance. Optical sensing offers a methodology to acquire detailed data on plant diseases across various spatial and temporal scales. Key technologies include multispectral, hyperspectral, and thermal imaging, as well as light detection and ranging; the associated sensors can be installed on ground-based platforms, uncrewed aerial vehicles, airplanes, and satellites. However, despite enormous potential for synergy, optical sensing and epidemiological modeling have rarely been integrated. To address this gap, we first review the state of the art to develop a common language accessible to both research communities. We then explore the opportunities and challenges in combining optical sensing with epidemiological modeling. We discuss how optical sensing can inform epidemiological modeling by improving model selection and parameterization and providing accurate maps of host plants. Epidemiological modeling can inform optical sensing by boosting measurement accuracy, improving data interpretation, and optimizing sensor deployment. We consider outstanding challenges in (A) identifying particular diseases; (B) data availability, quality, and resolution; (C) linking optical sensing and epidemiological modeling; and (D) emerging diseases. We conclude with recommendations to motivate and shape research and practice in both fields. Among other suggestions, we propose standardizing methods and protocols for optical sensing of plant health and developing open access databases including both optical sensing data and epidemiological models to foster cross-disciplinary work. [ ] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

15 January 2024 in Remote Sensing
Verified
Journal Article
Open access
PDF file
NCNicolò Camarretta
Nicolò Camarretta
GPGrant Pearse
Grant Pearse
BSBenjamin Samuel Cyril Steer
Benjamin Samuel Cyril Steer
EMEmily McLay
Emily McLay
SFStuart Fraser
Stuart Fraser
MWMichael S. Stuart Watt
Michael S. Stuart Watt
This study demonstrates a framework for using high-resolution satellite imagery to automatically map and monitor outbreaks of red needle cast (Phytophthora pluvialis) in planted pine forests. This methodology was tested on five WorldView satellite scenes collected over two sites in the Gisborne Region of New Zealand’s North Island. All scenes were acquired in September: four scenes were acquired yearly (2018–2020 and 2022) for Wharerata, while one more was obtained in 2019 for Tauwhareparae. Training areas were selected for each scene using manual delineation combined with pixel-level thresholding rules based on band reflectance values and vegetation indices (selected empirically) to produce ‘pure’ training pixels for the different classes. A leave-one-scene-out, pixel-based random forest classification approach was then used to classify all images into (i) healthy pine forest, (ii) unhealthy pine forest or (iii) background. The overall accuracy of the models on the internal validation dataset ranged between 92.1% and 93.6%. Overall accuracies calculated for the left-out scenes ranged between 76.3% and 91.1% (mean overall accuracy of 83.8%), while user’s and producer’s accuracies across the three classes were 60.2–99.0% (71.4–91.8% for unhealthy pine forest) and 54.4–100% (71.9–97.2% for unhealthy pine forest), respectively. This work demonstrates the possibility of using a random forest classifier trained on a set of satellite scenes for the classification of healthy and unhealthy pine forest in new and completely independent scenes. This paves the way for a scalable and largely autonomous forest health monitoring system based on annual acquisitions of high-resolution satellite imagery at the time of peak disease expression, while greatly reducing the need for manual interpretation and delineation.

15 March 2024 in Remote Sensing
Verified
Journal Article
Open access
PDF file
MWMichael S. Stuart Watt
Michael S. Stuart Watt
HEHoney Jane Estarija
Honey Jane Estarija
MBMichael Bartlett
Michael Bartlett
RMRussell Stuart Main
Russell Stuart Main
DPDalila Pasquini
Dalila Pasquini
Henning BuddenbaumHenning Buddenbaum
Henning Buddenbaum
Myrtle rust is a very damaging disease, caused by the fungus Austropuccinia psidii, which has recently arrived in New Zealand and threatens the iconic tree species pōhutukawa (Metrosideros excelsa). Canopy-level hyperspectral and thermal images were taken repeatedly within a controlled environment, from 49 inoculated (MR treatment) and 26 uninoculated (control treatment) pōhutukawa plants. Measurements were taken prior to inoculation and six times post-inoculation over a 14-day period. Using indices extracted from these data, the objectives were to (i) identify the key thermal and narrow-band hyperspectral indices (NBHIs) associated with the pre-visual and early expression of myrtle rust and (ii) develop a classification model to detect the disease. The number of symptomatic plants increased rapidly from three plants at 3 days after inoculation (DAI) to all 49 MR plants at 8 DAI. NBHIs were most effective for pre-visual and early disease detection from 3 to 6 DAI, while thermal indices were more effective for detection of disease following symptom expression from 7 to 14 DAI. Using results compiled from an independent test dataset, model performance using the best thermal indices and NBHIs was excellent from 3 DAI to 6 DAI (F1 score 0.81–0.85; accuracy 73–80%) and outstanding from 7 to 14 DAI (F1 score 0.92–0.93; accuracy 89–91%).

1 January 2023 in New Disease Reports
Verified
Journal Article
Open access
EMEmily McLay
Emily McLay
BRB. Rogan
B. Rogan
KDKiryn Barbara Dobbie
Kiryn Barbara Dobbie