Alice Johnston

Dr. Alice Johnston

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Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2020 in Journal of Artificial Societies and Social Simulation
Verified
Journal Article
Open access
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VGVolker Grimm
Volker Grimm
SRSteven F. Railsback
Steven F. Railsback
Christian Ernest VincenotChristian Ernest Vincenot
Christian Ernest Vincenot
Uta BergerUta Berger
Uta Berger
CGCara Gallagher
Cara Gallagher
DADaniel Ayllón
Daniel Ayllón
The Overview, Design concepts and Details (ODD) protocol for describing Individual-and Agent-Based Models (ABMs) is now widely accepted and used to document such models in journal articles. As a standardized document for providing a consistent, logical and readable account of the structure and dynamics of ABMs, some research groups also find it useful as a workflow for model design. Even so, there are still limitations to ODD that obstruct its more widespread adoption. Such limitations are discussed and addressed in this paper: the limited availability of guidance on how to use ODD; the length of ODD documents; limitations of ODD for highly complex models; lack of su icient details of many ODDs to enable reimplementation without access to the model code; and the lack of provision for sections in the document structure covering model design rationale, the model's underlying narrative, and the means by which the model's fitness for purpose is evaluated. We document the steps we have taken to provide better guidance on: structuring complex ODDs and an ODD summary for inclusion in a journal article (with full details in supplementary material; Table); using ODD to JASSS, () , http://jasss.soc.surrey.ac.uk/ / / .html Doi:. /jasss. point readers to relevant sections of the model code; update the document structure to include sections on model rationale and evaluation. We also further advocate the need for standard descriptions of simulation experiments and argue that ODD can in principle be used for any type of simulation model. Thereby

22 February 2021 in Nature Ecology & Evolution
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Journal Article
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AJAlice Johnston
Alice Johnston
AMAndrew Meade
Andrew Meade
JAJonas Ardö
Jonas Ardö
NANicola Arriga
Nicola Arriga
ABAndy Black
Andy Black
CVChris Venditti
Chris Venditti

27 August 2018 in Nature Ecology & Evolution
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Journal Article
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AJAlice Johnston
Alice Johnston
RSRichard M. Sibly
Richard M. Sibly

30 September 2020 in Nature Communications
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Journal Article
Open access
PDF file
VGVolker Grimm
Volker Grimm
AJAlice Johnston
Alice Johnston
HTHans-Hermann Thulke
Hans-Hermann Thulke
VFV. E. Forbes
V. E. Forbes
PTP. Thorbek
P. Thorbek
Decision makers must have sufficient confidence in models if they are to influence their decisions. We propose three screening questions to critically evaluate models with respect to their purpose, organization, and evidence. They enable a more transparent, robust, and secure use of model outputs.

16 October 2019 in Proceedings Of The Royal Society B-Biological Sciences
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Journal Article
Closed access
AJAlice Johnston
Alice Johnston
RBR. J. Boyd
R. J. Boyd
JWJ. W. Watson
J. W. Watson
APA. Paul
A. Paul
LEL. C. Evans
L. C. Evans
VBVictoria L Boult
Victoria L Boult
Animal populations will mediate the response of global biodiversity to environmental changes. Population models are thus important tools for both understanding and predicting animal responses to uncertain future conditions. Most approaches, however, are correlative and ignore the individual-level mechanisms that give rise to population dynamics. Here, we assess several existing population modelling approaches and find limitations to both ‘correlative’ and ‘mechanistic’ models. We advocate the need for a standardized mechanistic approach for linking individual mechanisms (physiology, behaviour, and evolution) to population dynamics in spatially explicit landscapes. Such an approach is potentially more flexible and informative than current population models. Key to realizing this goal, however, is overcoming current data limitations, the development and testing of eco-evolutionary theory to represent interactions between individual mechanisms, and standardized multi-dimensional environmental change scenarios which incorporate multiple stressors. Such progress is essential in supporting environmental decisions in uncertain future conditions.

7 April 2020 in Oecologia
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Journal Article
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AJAlice Johnston
Alice Johnston
RSRichard M. Sibly
Richard M. Sibly
Soil animals play important roles in ecosystem functioning and stability, but the environmental controls on their communities are not fully understood. In this study, we compiled a dataset of soil animal communities for which the abundance and body mass of multiple soil animal groups were recorded. The mass–abundance scaling relationships were then used to investigate multiple environmental controls on soil animal community composition. The data reveal latitudinal shifts from high abundances of small soil animals at high latitudes to greater relative abundances of large soil animals at low latitudes. A hierarchical linear mixed effects model was applied to reveal the environmental variables shaping these latitudinal trends. The final hierarchical model identified mean annual temperature, soil pH and soil organic carbon content as key environmental controls explaining global mass–abundance scaling relationships in soil animal communities (R2c = 0.828, Ngroup = 117). Such relationships between soil biota with climate and edaphic conditions have been previously identified for soil microbial, but not soil animal, communities at a global scale. More comprehensive global soil community datasets are needed to better understand the generality of these relationships over a broader range of global ecosystems and soil animal groups.