Alpay Ozcan

Dr. Alpay Ozcan

orcid

Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2002 in Cerebral Cortex
Verified
Journal Article
Open access
PDF file
RMRobert C McKinstry
Robert C McKinstry
AMAmit Mathur
Amit Mathur
JMJeffrey H Miller
Jeffrey H Miller
AOAlpay Ozcan
Alpay Ozcan
ASAbraham Z Snyder
Abraham Z Snyder
JNJeffrey J Neil
Jeffrey J Neil
Cerebral cortical development involves a complex cascade of events which are difficult to visualize in intact, living subjects. In this study, we apply diffusion tensor imaging (DTI) to the evaluation of cortical development in human infants ranging from 26 to 41 weeks gestational age (GA). Apparent diffusion of water in cortex is maximally anisotropic at 26 weeks GA and anisotropy values approach zero by 36 weeks GA. During this period, the major eigenvector of the diffusion tensor in cerebral cortex is oriented radially across the cortical plate, in accord with a predominately radial deployment of its neuronal constituents. Values for the rotationally averaged water diffusion coefficient increase between 26 and 32 weeks GA, then decrease thereafter. These changes in DTI parameters are specific to cerebral cortex and reflect changes in underlying cortical architecture and formation of neuronal connections. Because of its correlation with tissue microstructure and non-invasive nature, DTI offers unique insight into cortical development in preterm human newborns and, potentially, detection of derangements of its basic cytoarchiteture.

3 March 2023 in Journal of Magnetic Resonance Imaging
Verified
Journal Article
Open access
LHLydiane Hirschler
Lydiane Hirschler
Nico SollmannNico Sollmann
Nico Sollmann
BSBárbara Schmitz‐Abecassis
Bárbara Schmitz‐Abecassis
JPJoana Pinto
Joana Pinto
FAFatemehsadat Arzanforoosh
Fatemehsadat Arzanforoosh
GHGilbert Hangel
Gilbert Hangel
Preoperative clinical magnetic resonance imaging (MRI) protocols for gliomas, brain tumors with dismal outcomes due to their infiltrative properties, still rely on conventional structural MRI, which does not deliver information on tumor genotype and is limited in the delineation of diffuse gliomas. The GliMR COST action wants to raise awareness about the state of the art of advanced MRI techniques in gliomas and their possible clinical translation or lack thereof. This review describes current methods, limits, and applications of advanced MRI for the preoperative assessment of glioma, summarizing the level of clinical validation of different techniques. In this first part, we discuss dynamic susceptibility contrast and dynamic contrast‐enhanced MRI, arterial spin labeling, diffusion‐weighted MRI, vessel imaging, and magnetic resonance fingerprinting. The second part of this review addresses magnetic resonance spectroscopy, chemical exchange saturation transfer, susceptibility‐weighted imaging, MRI‐PET, MR elastography, and MR‐based radiomics applications.Evidence Level: 3Technical Efficacy: Stage 2

1 August 2005 in Journal of Biomechanical Engineering
Verified
Journal Article
Closed access
PDF file
NTNikolaos V. Tsekos
Nikolaos V. Tsekos
AOAlpay Ozcan
Alpay Ozcan
ECEftychios Christoforou
Eftychios Christoforou
The aim of this work is to develop a remotely controlled manipulator to perform minimally invasive diagnostic and therapeutic interventions in the abdominal and thoracic cavities, with real-time magnetic resonance imaging (MRI) guidance inside clinical cylindrical MR scanners. The manipulator is composed of a three degree of freedom Cartesian motion system, which resides outside the gantry of the scanner, and serves as the holder and global positioner of a three degree of freedom arm which extends inside the gantry of the scanner. At its distal end, the arm’s end-effector can carry an interventional tool such as a biopsy needle, which can be advanced to a desired depth by means of a seventh degree of freedom. These seven degrees of freedom, provided by the entire assembly, offer extended manipulability to the device and a wide envelope of operation to the user, who can select a trajectory suitable for the procedure. The device is constructed of nonmagnetic and nonconductive fiberglass, and carbon fiber composite materials, to minimize artifacts and distortion on the MR images as well as eliminate effects on its operation from the high magnetic field and the fast switching magnetic field gradients used in MR imaging. A user interface was developed for man-in-the-loop control of the device using real-time MR images. The user interface fuses all sensor signals (MR and manipulator information) in a visualization, planning, and control command environment. Path planning is performed with graphical tools for setting the trajectory of insertion of the interventional tool using multislice and∕or three dimensional MR images which are refreshed in real time. The device control is performed with an embedded computer which runs real-time control software. The manipulator compatibility with the MR environment and image-guided operation was tested on a 1.5T MR scanner.

13 March 2023 in Journal of Magnetic Resonance Imaging
Verified
Journal Article
Open access
GHGilbert Hangel
Gilbert Hangel
BSBárbara Schmitz‐Abecassis
Bárbara Schmitz‐Abecassis
Nico SollmannNico Sollmann
Nico Sollmann
JPJoana Pinto
Joana Pinto
FAFatemehsadat Arzanforoosh
Fatemehsadat Arzanforoosh
KEKyrre E. Emblem
Kyrre E. Emblem
Preoperative clinical MRI protocols for gliomas, brain tumors with dismal outcomes due to their infiltrative properties, still rely on conventional structural MRI, which does not deliver information on tumor genotype and is limited in the delineation of diffuse gliomas. The GliMR COST action wants to raise awareness about the state of the art of advanced MRI techniques in gliomas and their possible clinical translation. This review describes current methods, limits, and applications of advanced MRI for the preoperative assessment of glioma, summarizing the level of clinical validation of different techniques. In this second part, we review magnetic resonance spectroscopy (MRS), chemical exchange saturation transfer (CEST), susceptibility‐weighted imaging (SWI), MRI‐PET, MR elastography (MRE), and MR‐based radiomics applications. The first part of this review addresses dynamic susceptibility contrast (DSC) and dynamic contrast‐enhanced (DCE) MRI, arterial spin labeling (ASL), diffusion‐weighted MRI, vessel imaging, and magnetic resonance fingerprinting (MRF).Evidence Level: 3.Technical Efficacy: Stage 2.

1 January 2007 in Magnetic Resonance Imaging
Verified
Journal Article
Closed access
ECEftychios Christoforou
Eftychios Christoforou
EAErbil Akbudak
Erbil Akbudak
AOAlpay Ozcan
Alpay Ozcan
MKMenelaos Karanikolas
Menelaos Karanikolas
NTNikolaos V. Tsekos
Nikolaos V. Tsekos

24 April 2007 in NMR in Biomedicine
Verified
Journal Article
Open access
PDF file
JKJoong Hee Kim
Joong Hee Kim
KTKathryn Trinkaus
Kathryn Trinkaus
AOAlpay Ozcan
Alpay Ozcan
MBMatthew D. Budde
Matthew D. Budde
SSSheng‐Kwei Song
Sheng‐Kwei Song
It has been demonstrated previously that water diffusion anisotropy in vivo is equivalent to that observed ex vivo after perfusion fixation in the mouse brain. This finding supports the practice of ex vivo diffusion tensor imaging (DTI) measurement on perfusion‐fixed tissues. However, the validity of extrapolating ex vivo DTI measurements from immersion‐fixed autopsy specimens to the in vivo state is questionable because of variable postmortem delays often encountered before fixation. In this study, we investigated the effect of postmortem delay on the water diffusion anisotropy of ventrolateral spinal cord white matter from mice. Mouse spinal cords, each from the same animal, were examined using DTI in vivo, in situ after death before fixation, and ex vivo immersion fixed 10 h after death. Our results suggest that diffusion anisotropy in mouse spinal cord is preserved up to 10 h after death. Regional characteristics of diffusion anisotropy in mouse spinal cord white matter are equivalent in vivo, in situ after death (up to 10 h before fixation), and ex vivo 15 weeks after immersion fixation. Copyright © 2007 John Wiley & Sons, Ltd.