FAZLY SALLEH ABAS

Dr. FAZLY SALLEH ABAS

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 November 2022 in Applied Intelligence
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HGHock-Ann Goh
Hock-Ann Goh
CHChin-Kuan Ho
Chin-Kuan Ho
FAFAZLY SALLEH ABAS
FAZLY SALLEH ABAS

8 December 2022 in Diagnostics
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Mohammad Faizal Ahmad FauziMohammad Faizal Ahmad Fauzi
Mohammad Faizal Ahmad Fauzi
Wan Siti Halimatul Munirah Wan AhmadWan Siti Halimatul Munirah Wan Ahmad
Wan Siti Halimatul Munirah Wan Ahmad
MJMohammad Fareed Jamaluddin
Mohammad Fareed Jamaluddin
JLJenny Tung Hiong Lee
Jenny Tung Hiong Lee
SKsee yee Khor
see yee Khor
Nouar AlDahoulNouar AlDahoul
Nouar AlDahoul
Hormone receptor status is determined primarily to identify breast cancer patients who may benefit from hormonal therapy. The current clinical practice for the testing using either Allred score or H-score is still based on laborious manual counting and estimation of the amount and intensity of positively stained cancer cells in immunohistochemistry (IHC)-stained slides. This work integrates cell detection and classification workflow for breast carcinoma estrogen receptor (ER)-IHC-stained images and presents an automated evaluation system. The system first detects all cells within the specific regions and classifies them into negatively, weakly, moderately, and strongly stained, followed by Allred scoring for ER status evaluation. The generated Allred score relies heavily on accurate cell detection and classification and is compared against pathologists’ manual estimation. Experiments on 40 whole-slide images show 82.5% agreement on hormonal treatment recommendation, which we believe could be further improved with an advanced learning model and enhancement to address the cases with 0% ER status. This promising system can automate the exhaustive exercise to provide fast and reliable assistance to pathologists and medical personnel. The system has the potential to improve the overall standards of prognostic reporting for cancer patients, benefiting pathologists, patients, and also the public at large.

19 July 2023 in IEEE Access
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Journal Article
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Wan Siti Halimatul Munirah Wan AhmadWan Siti Halimatul Munirah Wan Ahmad
Wan Siti Halimatul Munirah Wan Ahmad
Mohammad Faizal Ahmad FauziMohammad Faizal Ahmad Fauzi
Mohammad Faizal Ahmad Fauzi
JHJahid Hasan
Jahid Hasan
ZRZaka Ur Rehman
Zaka Ur Rehman
JLJenny Tung Hiong Lee
Jenny Tung Hiong Lee
SKSei-Ichiro Kamata
Sei-Ichiro Kamata
Nuclei classification is a mandatory process to obtain scoring information for whole slide images. In immunohistochemistry (IHC) staining specifically for estrogen-receptor (ER) biomarker, an Allred score based on the proportion and intensity of cancer nuclear staining is widely used in histopathology practice to predict response to hormonal treatment. This manually exhaustive process can be accelerated with the help of computational intelligence. In this article, we present a thorough analysis of 37 whole slide images of breast cancer cases with over 2.8 million segmented nuclei. ER-stained nuclei were classified into negative, weak, moderate and strong intensities using DenseNet deep learning architecture, contributing to Allred scoring. Seven different models and configurations were exhaustively analysed in six tests to obtain the scoring reaching best concordance of 56.8% and 81.1% with the pathologist’s manual score and suggested hormonal treatment. We also discussed in detail the causes that lead to the non-concordances. This study follows the pathologists’ workflow in obtaining the Allred score but is fully automated. It provides a basis for the development of more complex deep learning models, particularly for nuclei classification and achieving accurate scoring of ER-IHC stained whole slide images.

1 December 2022 in IAES International Journal of Artificial Intelligence (IJ-AI)
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HAHatem Fahd Al-Selwi
Hatem Fahd Al-Selwi
AAAzlan Abd Aziz
Azlan Abd Aziz
FAFAZLY SALLEH ABAS
FAZLY SALLEH ABAS
NHNur Asyiqin Amir Hamzah
Nur Asyiqin Amir Hamzah
AMAzwan Mahmud
Azwan Mahmud
Traffic flow prediction is an integral part of the intelligent transportation system (ITS) that helps in making well-informed decisions. Traffic flow prediction helps in alleviating traffic congestion as well as in some connected vehicles applications such as resources allocation. However, most of the existing models do not consider external factors such as weather data. Traffic flow in road networks is affected by weather conditions which affects the periodicity of traffic. These effects introduce some irregularity to the traffic pattern, making traffic flow prediction a challenging issue. In this paper, we present a detailed investigation on the impact of weather data on different traffic flow prediction models. The investigation presented in this paper demonstrates how adding weather data could improve the models’ prediction accuracy and efficiency.

22 January 2017 in Cytometry Part A
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FAFAZLY SALLEH ABAS
FAZLY SALLEH ABAS
ASArwa Shana'Ah
Arwa Shana'Ah
BCBeth Christian
Beth Christian
RHRobert Hasserjian
Robert Hasserjian
ALAbner Louissaint
Abner Louissaint
Metin N. GurcanMetin N. Gurcan
Metin N. Gurcan

21 September 2024 in Diagnostics
Verified
Journal Article
Open access
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ZRZaka Ur Rehman
Zaka Ur Rehman
Mohammad Faizal Ahmad FauziMohammad Faizal Ahmad Fauzi
Mohammad Faizal Ahmad Fauzi
Wan Siti Halimatul Munirah Wan AhmadWan Siti Halimatul Munirah Wan Ahmad
Wan Siti Halimatul Munirah Wan Ahmad
FAFAZLY SALLEH ABAS
FAZLY SALLEH ABAS
PCPhaik Leng Cheah
Phaik Leng Cheah
Lai Meng LooiLai Meng Looi
Lai Meng Looi
Recent advancements in medical imaging have greatly enhanced the application of computational techniques in digital pathology, particularly for the classification of breast cancer using in situ hybridization (ISH) imaging. HER2 amplification, a key prognostic marker in 20–25% of breast cancers, can be assessed through alterations in gene copy number or protein expression. However, challenges persist due to the heterogeneity of nuclear regions and complexities in cancer biomarker detection. This review examines semi-automated and fully automated computational methods for analyzing ISH images with a focus on HER2 gene amplification. Literature from 1997 to 2023 is analyzed, emphasizing silver-enhanced in situ hybridization (SISH) and its integration with image processing and machine learning techniques. Both conventional machine learning approaches and recent advances in deep learning are compared. The review reveals that automated ISH analysis in combination with bright-field microscopy provides a cost-effective and scalable solution for routine pathology. The integration of deep learning techniques shows promise in improving accuracy over conventional methods, although there are limitations related to data variability and computational demands. Automated ISH analysis can reduce manual labor and increase diagnostic accuracy. Future research should focus on refining these computational methods, particularly in handling the complex nature of HER2 status evaluation, and integrate best practices to further enhance clinical adoption of these techniques.