Andrés López-Rubio

Dr. Andrés López-Rubio

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2010 in Memórias do Instituto Oswaldo Cruz
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Journal Article
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LGLina Andrea Gutiérrez
Lina Andrea Gutiérrez
LOLina M Orrego
Lina M Orrego
GGGiovan F Gómez
Giovan F Gómez
ALAndrés López-Rubio
Andrés López-Rubio
SLShirley Luckhart
Shirley Luckhart
MCMargarita M Correa
Margarita M Correa
An understanding of the taxonomic status and vector distribution of anophelines is crucial in controlling malaria. Previous phylogenetic analyses have supported the description of six species of the Neotropical malaria vector Anopheles (Nyssorhynchus) albitarsis s.l. (Diptera: Culicidae): An. albitarsis, Anopheles deaneorum, Anopheles marajoara, Anopheles oryzalimnetes, Anopheles janconnae and An. albitarsis F. To evaluate the taxonomic status of An. albitarsis s.l. mosquitoes collected in various localities in the Colombian Caribbean region, specimens were analyzed using the complete mitochondrial DNA cytochrome oxidase I (COI) gene, the ribosomal DNA (rDNA) internal transcribed spacer 2 (ITS2) region and partial nuclear DNA white gene sequences. Phylogenetic analyses of the COI gene sequences detected a new lineage closely related to An. janconnae in the Caribbean region of Colombia and determined its position relative to the other members of the complex. However, the ITS2 and white gene sequences lacked sufficient resolution to support a new lineage closely related to An. janconnae or the An. janconnae clade. The possible involvement of this new lineage in malaria transmission in Colombia remains unknown, but its phylogenetic closeness to An. janconnae, which has been implicated in local malaria transmission in Brazil, is intriguing.

17 October 2016 in Zootaxa
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Journal Article
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ALAndrés López-Rubio
Andrés López-Rubio
JSJuan Suaza-Vasco
Juan Suaza-Vasco
PMPaula L Marcet
Paula L Marcet
NRNatalia Ruíz-Molina
Natalia Ruíz-Molina
LCLorenzo Cáceres
Lorenzo Cáceres
SUSandra I. Uribe-Soto
Sandra I. Uribe-Soto
A reference 535 bp barcode sequence from a fragment of the mitochondrial gene cytochrome oxidase I (COI), acquired from specimens of An. neivai Howard, Dyar & Knab, 1913 from its type locality in Panama, was used as a tool for distinguishing this species from others in the subgenus Kerteszia. Comparisons with corresponding regions of COI between An. neivai and other species in the subgenus (An. bellator Dyar & Knab 1906, An. homunculus Komp 1937, An cruzii Dyar & Knab, 1908 and An. laneanus Corrêa & Cerqueira, 1944) produced K2P genetic distances of 8.3–12.6%, values well above those associated with intraspecific variation. In contrast, genetic distances among 55 specimens from five municipalities in the Colombian Pacific coastal state of Chocó were all within the range of 0–2.5%, with an optimized barcode threshold of 1.3%, the limit for unambiguous differentiation of An. neivai. Among specimens from the Chocó region, 18 haplotypes were detected, two of which were widely distributed over the municipalities sampled. The barcode sequence permits discrimination of An. neivai from sympatric species and indicates genetic variability within the species; aspects key to malaria surveillance and control as well as defining geographic distribution and dispersion patterns.

1 January 2016 in Genetics and Molecular Research
Verified
Journal Article
Open access
EGEsteban Galeano
Esteban Galeano
ABArthur Barroso
Arthur Barroso
TVT.S. Vasconcelos
T.S. Vasconcelos
ALAndrés López-Rubio
Andrés López-Rubio
AAA.J.P. Albrecht
A.J.P. Albrecht
HCHelaine Carrer
Helaine Carrer
Weed resistance to herbicides is a natural phenomenon that exerts selection on individuals in a population. In Brazil, glyphosate resistance was recently detected in Digitaria insularis. The objective of this study was to elucidate mechanisms of weed resistance in this plant, including genetic variability, allelism, amino acid substitutions, gene expression, and enzymatic activity levels. Most of these have not previously been studied in this species. D. insularis DNA sequences were used to analyze genetic variability. cDNA from resistant and susceptible plants was used to identify mutations, alleles, and 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) expression, using real-time quantitative reverse transcription-polymerase chain reaction. In addition, EPSPS activity was measured. We found a decrease in genetic variability between populations related to glyphosate application. Substitutions from proline to threonine and tyrosine to cysteine led to a decrease in EPSPS affinity for the glyphosate. In addition, the EPSPS enzymatic activity was slightly higher in resistant plants, whereas EPSPS gene expression was almost identical in both biotypes, suggesting feedback regulation at different levels. To conclude, our results suggest new molecular mechanisms used by D. insularis to increase glyphosate resistance.

1 June 2015 in Journal of the American Mosquito Control Association
Verified
Journal Article
Closed access
JSJuan Suaza-Vasco
Juan Suaza-Vasco
ALAndrés López-Rubio
Andrés López-Rubio
JGJuan Galeano
Juan Galeano
SUSandra I. Uribe-Soto
Sandra I. Uribe-Soto
IVIván Vélez
Iván Vélez
CPCharles Porter
Charles Porter
Sampling for sabethine mosquitoes occurred intermittently from September 2007 to April 2013 in 17 municipalities, located in 5 departments (divisions) in the northern Andean coffee-growing regions of Colombia. Of the 9 genera within the Sabethini tribe known to occur in the Neotropical region, 6 were encountered including 15 species: Jonhbelkinia ulopus, Limatus durhamii, Sabethes ignotus, Sa. luxodens, Sa. undosus, Shannoniana fluviatilis, Trichoprosopon compressum, Tr. digitatum, Tr. evansae, Tr. pallidiventer s.l., Tr. pallidiventer s.s., Wyeomyia arthrostigma, Wy. oblita, Wy. ulocoma, and Wy. undulata. The species Sa. luxodens and Wy. undulata constitute new records for Colombia. These records broaden the knowledge of this important group that includes some important species related to the arbovirus transmission. Records are from the northern Colombian Andes, a region noted for coffee cultivation and ecotourism.

19 July 2023 in Journal of Medical Entomology
Verified
Journal Article
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EAEduardo Amat
Eduardo Amat
GGGiovan F Gómez
Giovan F Gómez
ALAndrés López-Rubio
Andrés López-Rubio
LGLuz M Gómez-Piñerez
Luz M Gómez-Piñerez
JRJOSE ALBERTINO RAFAEL
JOSE ALBERTINO RAFAEL
Blow flies are of medical, sanitary, veterinary, and forensic importance. Their accurate taxonomic identification is essential for their use in applied research. However, neotropical fauna has not been completely studied or described, and taxa identification without the required training is a difficult task. Additionally, the current morphological keys are not fitting to all extant taxa. Molecular-based approaches are widely used to overcome these issues, including the standard 5ʹ COI barcode fragment (~650 base pairs [bp]) for identification at the species level. Here, a shorter sequence of 5ʹ COI fragment (~342 bp) was assessed for the identification of 28 blow fly species inhabiting the northwest of South America. One tree-based (the generalized mixed Yule-coalescent—GMYC) and 3 distance-based approaches (automatic barcode gap discover – ABGD, the best close match – BCM, and the nearest neighbor – NN) analyses were performed. Noticeably, the amplification and sequencing of samples that had been preserved for up to 57 years were successful. The tree topology assigned 113 sequences to a specific taxon (70% effectiveness), while the distance approach assigned to 95 (59% effectiveness). The short fragment allowed the molecular identification of 19 species (60% of neotropical species except for the Lucilia species and Hemilucilia semidiaphana). According to these findings, the taxonomic and faunistic considerations of the blow fly fauna were provided. Overall, the short fragment approach constitutes an optimal species confirmation tool for the most common blow flies in northwestern South America.

1 October 2021 in Genome
Verified
Journal Article
Closed access
MMMario Alejandro Marín
Mario Alejandro Marín
ALAndrés López-Rubio
Andrés López-Rubio
ACAlejandra Clavijo
Alejandra Clavijo
TPTomasz Wilhelm Pyrcz
Tomasz Wilhelm Pyrcz
AFAndré V Lucci Freitas
André V Lucci Freitas
CÁCarlos Federico Álvarez
Carlos Federico Álvarez
Cryptic biological diversity has generated ambiguity in taxonomic and evolutionary studies. Single-locus methods and other approaches for species delimitation are useful for addressing this challenge, enabling the practical processing of large numbers of samples for identification and inventory purposes. This study analyzed an assemblage of high Andean butterflies using DNA barcoding and compared the identifications based on the current morphological taxonomy with three methods of species delimitation (automatic barcode gap discovery, generalized mixed Yule coalescent model, and Poisson tree processes). Sixteen potential cryptic species were recognized using these three methods, representing a net richness increase of 11.3% in the assemblage. A well-studied taxon of the genus Vanessa, which has a wide geographical distribution, appeared with the potential cryptic species that had a higher genetic differentiation at the local level than at the continental level. The analyses were useful for identifying the potential cryptic species in Pedaliodes and Forsterinaria complexes, which also show differentiation along altitudinal and latitudinal gradients. This genetic assessment of an entire assemblage of high Andean butterflies (Papilionoidea) provides baseline information for future research in a region characterized by high rates of endemism and population isolation.