Jie Liu

Prof. Jie Liu

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2014 in BioMedical Engineering OnLine
Verified
Journal Article
Open access
PDF file
HHHuifang Huang
Huifang Huang
JLJie Liu
Jie Liu
QZQiang Zhu
Qiang Zhu
RWRuiping Wang
Ruiping Wang
GHGuangshu Hu
Guangshu Hu
The inter-patient classification schema and the Association for the Advancement of Medical Instrumentation (AAMI) standards are important to the construction and evaluation of automated heartbeat classification systems. The majority of previously proposed methods that take the above two aspects into consideration use the same features and classification method to classify different classes of heartbeats. The performance of the classification system is often unsatisfactory with respect to the ventricular ectopic beat (VEB) and supraventricular ectopic beat (SVEB). Based on the different characteristics of VEB and SVEB, a novel hierarchical heartbeat classification system was constructed. This was done in order to improve the classification performance of these two classes of heartbeats by using different features and classification methods. First, random projection and support vector machine (SVM) ensemble were used to detect VEB. Then, the ratio of the RR interval was compared to a predetermined threshold to detect SVEB. The optimal parameters for the classification models were selected on the training set and used in the independent testing set to assess the final performance of the classification system. Meanwhile, the effect of different lead configurations on the classification results was evaluated. Results showed that the performance of this classification system was notably superior to that of other methods. The VEB detection sensitivity was 93.9% with a positive predictive value of 90.9%, and the SVEB detection sensitivity was 91.1% with a positive predictive value of 42.2%. In addition, this classification process was relatively fast. A hierarchical heartbeat classification system was proposed based on the inter-patient data division to detect VEB and SVEB. It demonstrated better classification performance than existing methods. It can be regarded as a promising system for detecting VEB and SVEB of unknown patients in clinical practice.

8 June 2020 in Molecular Imaging and Biology
Verified
Journal Article
Open access
PDF file
DLDan Li
Dan Li
HHHui Hui
Hui Hui
YZYingqian Zhang
Yingqian Zhang
WTWei Tong
Wei Tong
FTFeng Tian
Feng Tian
JTJie Tian
Jie Tian
Purpose: Histological analysis of artery tissue samples is a widely used method for diagnosis and quantification of cardiovascular diseases. However, the variable and labor-intensive tissue staining procedures hinder efficient and informative histological image analysis. Procedures: In this study, we developed a deep learning-based method to transfer bright-field microscopic images of unlabeled tissue sections into equivalent bright-field images of histologically stained versions of the same samples. We trained a convolutional neural network to build maps between the unstained images and histologically stained images using a conditional generative adversarial network model. Results: The results of a blind evaluation by board-certified pathologists illustrate that the virtual staining and standard histological staining images of rat carotid artery tissue sections and those involving different types of stains showed no major differences. Quantification of virtual and histological H&E staining in carotid artery tissue sections showed that the relative errors of intima thickness, intima area, and media area were lower than 1.6 %, 5.6 %, and 12.7 %, respectively. The training time of deep learning network was 12.857 h with 1800 training patches and 200 epoches. Conclusions: This virtual staining method significantly mitigates the typically laborious and time-consuming histological staining procedures and could be augmented with other label-free microscopic imaging modalities.

10 June 2022 in Physics in Medicine & Biology
Verified
Journal Article
Open access
SYShang Yaxin
Shang Yaxin
JLJie Liu
Jie Liu
LZLiwen Zhang
Liwen Zhang
XWXiangjun Wu
Xiangjun Wu
PZPeng Zhang
Peng Zhang
JTJie Tian
Jie Tian
Objective. Magnetic particle imaging (MPI) is a new medical, non-destructive, imaging method for visualizing the spatial distribution of superparamagnetic iron oxide nanoparticles. In MPI, spatial resolution is an important indicator of efficiency; traditional techniques for improving the spatial resolution may result in higher costs, lower sensitivity, or reduced contrast. Approach. Therefore, we propose a deep-learning approach to improve the spatial resolution of MPI by fusing a dual-sampling convolutional neural network (FDS-MPI). An end-to-end model is established to generate high-spatial-resolution images from low-spatial-resolution images, avoiding the aforementioned shortcomings. Main results. We evaluate the performance of the proposed FDS-MPI model through simulation and phantom experiments. The results demonstrate that the FDS-MPI model can improve the spatial resolution by a factor of two. Significance. This significant improvement in MPI could facilitate the preclinical application of medical imaging modalities in the future.

26 August 2016 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
GZGuanglei Zhang
Guanglei Zhang
FLFei Liu
Fei Liu
JLJie Liu
Jie Liu
JLJianwen Luo
Jianwen Luo
Yaoqin XIEYaoqin XIE
Yaoqin XIE
Lei XingLei Xing
Lei Xing
X-ray luminescence computed tomography (XLCT), which aims to achieve molecular and functional imaging by X-rays, has recently been proposed as a new imaging modality. Combining the principles of X-ray excitation of luminescence-based probes and optical signal detection, XLCT naturally fuses functional and anatomical images and provides complementary information for a wide range of applications in biomedical research. In order to improve the data acquisition efficiency of previously developed narrow-beam XLCT, a cone beam XLCT (CB-XLCT) mode is adopted here to take advantage of the useful geometric features of cone beam excitation. Practically, a major hurdle in using cone beam X-ray for XLCT is that the inverse problem here is seriously ill-conditioned, hindering us to achieve good image quality. In this paper, we propose a novel Bayesian method to tackle the bottleneck in CB-XLCT reconstruction. The method utilizes a local regularization strategy based on Gaussian Markov random field to mitigate the ill-conditioness of CB-XLCT. An alternating optimization scheme is then used to automatically calculate all the unknown hyperparameters while an iterative coordinate descent algorithm is adopted to reconstruct the image with a voxel-based closed-form solution. Results of numerical simulations and mouse experiments show that the self-adaptive Bayesian method significantly improves the CB-XLCT image quality as compared with conventional methods.

27 October 2023 in Computerized Medical Imaging and Graphics
Verified
Journal Article
Closed access
XLXiao Liu
Xiao Liu
CYChong Yao
Chong Yao
HCHongyi Chen
Hongyi Chen
RXRui Xiang
Rui Xiang
HWHao Wu
Hao Wu
DGDaoying Geng
Daoying Geng

23 May 2016 in Biomedical Optics Express
Verified
Journal Article
Open access
PDF file
SJShixin Jiang
Shixin Jiang
JLJie Liu
Jie Liu
YAYu An
Yu An
GZGuanglei Zhang
Guanglei Zhang
JYJinzuo Ye
Jinzuo Ye
JTJie Tian
Jie Tian
Fluorescence molecular tomography (FMT) is a promising tomographic method in preclinical research, which enables noninvasive real-time three-dimensional (3-D) visualization for in vivo studies. The ill-posedness of the FMT reconstruction problem is one of the many challenges in the studies of FMT. In this paper, we propose a l2,1-norm optimization method using a priori information, mainly the structured sparsity of the fluorescent regions for FMT reconstruction. Compared to standard sparsity methods, the structured sparsity methods are often superior in reconstruction accuracy since the structured sparsity utilizes correlations or structures of the reconstructed image. To solve the problem effectively, the Nesterov’s method was used to accelerate the computation. To evaluate the performance of the proposed l2,1-norm method, numerical phantom experiments and in vivo mouse experiments are conducted. The results show that the proposed method not only achieves accurate and desirable fluorescent source reconstruction, but also demonstrates enhanced robustness to noise.