Baoru Huang

Dr. Baoru Huang


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 April 2022 in IEEE Transactions on Medical Robotics and Bionics
Verified
Journal Article
Closed access
BHBaoru Huang
Baoru Huang
ANAnh Nguyen
Anh Nguyen
SWSiyao Wang
Siyao Wang
ZWZiyang Wang
Ziyang Wang
EMErik Mayer
Erik Mayer
DEDaniel S. Elson
Daniel S. Elson
Surgical instrument segmentation and depth estimation are crucial steps to improve autonomy in robotic surgery. Most recent works treat these problems separately, making the deployment challenging. In this paper, we propose a unified framework for depth estimation and surgical tool segmentation in laparoscopic images. The network has an encoder-decoder architecture and comprises two branches for simultaneously performing depth estimation and segmentation. To train the network end to end, we propose a new multi-task loss function that effectively learns to estimate depth in an unsupervised manner, while requiring only semi-ground truth for surgical tool segmentation. We conducted extensive experiments on different datasets to validate these findings. The results showed that the end-to-end network successfully improved the state-of-the-art for both tasks while reducing the complexity during their deployment.

28 December 2018 in IEEE Robotics and Automation Letters
Verified
Journal Article
Open access
DZDandan Zhang
Dandan Zhang
BXBo Xiao
Bo Xiao
BHBaoru Huang
Baoru Huang
LZLin Zhang
Lin Zhang
JLJindong Liu
Jindong Liu
GYGuang-Zhong Yang
Guang-Zhong Yang

21 November 2023 in Medical Image Analysis
Verified
Journal Article
Open access
JZJian-Qing Zheng
Jian-Qing Zheng
Ziyang WangZiyang Wang
Ziyang Wang
BHBaoru Huang
Baoru Huang
NLNgee Han Lim
Ngee Han Lim
BPBartłomiej W. Papież
Bartłomiej W. Papież
Deformable image registration, the estimation of the spatial transformation between different images, is an important task in medical imaging. Deep learning techniques have been shown to perform 3D image registration efficiently. However, current registration strategies often only focus on the deformation smoothness, which leads to the ignorance of complicated motion patterns (e.g., separate or sliding motions), especially for the intersection of organs. Thus, the performance when dealing with the discontinuous motions of multiple nearby objects is limited, causing undesired predictive outcomes in clinical usage, such as misidentification and mislocalization of lesions or other abnormalities. Consequently, we proposed a novel registration method to address this issue: a new Motion Separable backbone is exploited to capture the separate motion, with a theoretical analysis of the upper bound of the motions' discontinuity provided. In addition, a novel Residual Aligner module was used to disentangle and refine the predicted motions across the multiple neighboring objects/organs. We evaluate our method, Residual Aligner-based Network (RAN), on abdominal Computed Tomography (CT) scans and it has shown to achieve one of the most accurate unsupervised inter-subject registration for the 9 organs, with the highest-ranked registration of the veins (Dice Similarity Coefficient (%)/Average surface distance (mm): 62%/4.9mm for the vena cava and 34%/7.9mm for the portal and splenic vein), with a smaller model structure and less computation compared to state-of-the-art methods. Furthermore, when applied to lung CT, the RAN achieves comparable results to the best-ranked networks (94%/3.0mm), also with fewer parameters and less computation.

5 July 2024 in IEEE Transactions on Medical Robotics and Bionics
Verified
Journal Article
Closed access
TJTudor Jianu
Tudor Jianu
BHBaoru Huang
Baoru Huang
MVMinh Nhat Vu
Minh Nhat Vu
MAMohamed E. M. K. Abdelaziz
Mohamed E. M. K. Abdelaziz
Sebastiano FicheraSebastiano Fichera
Sebastiano Fichera
ANAnh Nguyen
Anh Nguyen
Autonomous robots in endovascular operations have the potential to navigate circulatory systems safely and reliably while decreasing the susceptibility to human errors. However, there are numerous challenges involved with the process of training such robots, such as long training duration and safety issues arising from the interaction between the catheter and the aorta. Recently, endovascular simulators have been employed for medical training but generally do not conform to autonomous catheterization due to the lack of standardization and RL framework compliance. Furthermore, most current simulators are closed-source, which hinders the collaborative development of safe and reliable autonomous systems through shared learning and community-driven enhancements. In this work, we introduce CathSim, an open-source simulation environment that accelerates the development of machine learning algorithms for autonomous endovascular navigation. We first simulate the high-fidelity catheter and aorta with a state-of-the-art endovascular robot. We then provide the capability of real-time force sensing between the catheter and the aorta in simulation. Furthermore, we validate our simulator by conducting two different catheterization tasks using two popular reinforcement learning algorithms, namely SAC and PPO. The experimental results show that our open-source simulator can mimic the behavior of real-world endovascular robots and facilitate the development of different autonomous catheterization tasks. Our simulator is publicly available at https://github.com/airvlab/cathsim.

21 September 2021
Verified
Book Chapter
Closed access
PDF file
BHBaoru Huang
Baoru Huang
JZJian-Qing Zheng
Jian-Qing Zheng
ANAnh Nguyen
Anh Nguyen
DTDavid Tuch
David Tuch
KVKunal Vyas
Kunal Vyas
DEDaniel S. Elson
Daniel S. Elson

16 June 2020 in International Journal of Computer Assisted Radiology and Surgery
Verified
Journal Article
Open access
PDF file
BHBaoru Huang
Baoru Huang
YTYa-Yen Tsai
Ya-Yen Tsai
JCJoão Cartucho
João Cartucho
KVKunal Vyas
Kunal Vyas
DTDavid Tuch
David Tuch
DEDaniel S. Elson
Daniel S. Elson
Purpose: In surgical oncology, complete cancer resection and lymph node identification are challenging due to the lack of reliable intraoperative visualization. Recently, endoscopic radio-guided cancer resection has been introduced where a novel tethered laparoscopic gamma detector can be used to determine the location of tracer activity, which can complement preoperative nuclear imaging data and endoscopic imaging. However, these probes do not clearly indicate where on the tissue surface the activity originates, making localization of pathological sites difficult and increasing the mental workload of the surgeons. Therefore, a robust real-time gamma probe tracking system integrated with augmented reality is proposed. Methods: A dual-pattern marker has been attached to the gamma probe, which combines chessboard vertices and circular dots for higher detection accuracy. Both patterns are detected simultaneously based on blob detection and the pixel intensity-based vertices detector and used to estimate the pose of the probe. Temporal information is incorporated into the framework to reduce tracking failure. Furthermore, we utilized the 3D point cloud generated from structure from motion to find the intersection between the probe axis and the tissue surface. When presented as an augmented image, this can provide visual feedback to the surgeons. Results: The method has been validated with ground truth probe pose data generated using the OptiTrack system. When detecting the orientation of the pose using circular dots and chessboard dots alone, the mean error obtained is $$0.05^{\circ }$$ 0 . 05 ∘ and $$0.06^{\circ }$$ 0 . 06 ∘ , respectively. As for the translation, the mean error for each pattern is 1.78 mm and 1.81 mm. The detection limits for pitch, roll and yaw are $$360^{\circ }, 360^{\circ }$$ 360 ∘ , 360 ∘ and $$8^{\circ }$$ 8 ∘ – $$82^{\circ }\cup 188^{\circ }$$ 82 ∘ ∪ 188 ∘ – $$352^{\circ }$$ 352 ∘ . Conclusion: The performance evaluation results show that this dual-pattern marker can provide high detection rates, as well as more accurate pose estimation and a larger workspace than the previously proposed hybrid markers. The augmented reality will be used to provide visual feedback to the surgeons on the location of the affected lymph nodes or tumor.