Wen-ping Yun

Dr. Wen-ping Yun


Research Focus & Metrics

Academic Career Length

1Year (2026-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 March 2026 in Reports
Verified
Journal Article
Open access
PDF file
Tsair-Fwu LEETsair-Fwu LEE
Tsair-Fwu LEE
WYWen-ping Yun
Wen-ping Yun
HHHung-Wei Hsu
Hung-Wei Hsu
JWJyun-Jie Wu
Jyun-Jie Wu
YKYa-Shin Kuan
Ya-Shin Kuan
PCPei-Ju Chao
Pei-Ju Chao
Background/Objectives: This study developed and evaluated a BERT-assisted literature screening workflow to support meta-analyses of postradiotherapy complications in nasopharyngeal carcinoma patients. The aim was to automate key screening steps to improve downstream screening efficiency and consistency, while minimizing time and bias during manual reviews. Materials and Methods: A bidirectional encoder representations from transformers (BERT) model was integrated into a standard systematic review pipeline for studies on postradiotherapy complications in nasopharyngeal carcinoma. The workflow combined automated BERT-based classification with manual verification and followed PRISMA and PICOS guidelines for literature identification, screening, and eligibility assessment. Model training involved hyperparameter tuning and comparison of different optimizers to maximize screening performance against a manually curated reference set, with particular attention to discrimination (AUC) and processing time. Results: From an initial corpus of 6496 records, the combined automated and manual workflow identified 23 eligible studies for meta-analysis. The included studies showed substantial heterogeneity (I2 = 86.85%), supporting the use of a random-effects model to pool outcomes. The BERT model optimized with an Adagrad optimizer achieved an AUC of 0.77 for relevant-study classification and reduced screening time to 1142 s. To demonstrate the workflow’s utility, a downstream meta-analysis was conducted using the identified studies. As a downstream application based on the identified studies, a quantitative synthesis was conducted, in which (meta-analysis of the 23 included studies), a random forest model—evaluated across those studies—achieved an AUC of 0.92 under a fixed-effect analysis for predicting postradiotherapy complications. Conclusions: Integrating BERT into the literature screening phase of meta-analysis for postradiotherapy nasopharyngeal carcinoma complications markedly improved screening efficiency while maintaining acceptable classification performance. This workflow demonstrates the feasibility of transformer-based assistance for systematic reviews and provides a foundation for developing disease-specific, AI-augmented evidence synthesis pipelines in oncology.

13 February 2026 in Life
Verified
Journal Article
Open access
PDF file
Tsair-Fwu LEETsair-Fwu LEE
Tsair-Fwu LEE
WYWen-ping Yun
Wen-ping Yun
LCLing-Chuan Chang-Chien
Ling-Chuan Chang-Chien
HCHung-Yu Chang
Hung-Yu Chang
YLYi-Lun Liao
Yi-Lun Liao
PCPei-Ju Chao
Pei-Ju Chao
Purpose: This study develops a predictive model for radiation pneumonitis (RP) risk in lung cancer patients after volume-modulated arc therapy (VMAT) that leverages high-dimensional dosiomics and dose–volume histogram (DVH) features within IDLSS (incremental-dose interval-based lung subregion) lung subregions. Methods: We retrospectively analyzed data from 136 lung cancer patients treated with VMAT between 2015 and 2022, including 39 patients who developed RP greater than Grade 2. Using the IDLSS method, seven regions of interest (ROIs), including the Planning Target Volume (PTV), normal lung, and five subdivided lung areas, were delineated on pretreatment Computed Tomography (CT) images. DVH, radiomics, and dosiomics features were extracted from these ROIs and organized into nine distinct feature sets. A comprehensive pipeline was applied, integrating IDLSS-defined lung subregions, high-dimensional dosiomics features, LASSO-based feature selection, and SMOTE oversampling to address class imbalance in the training data. Logistic regression, random forest, and feedforward neural networks were constructed and optimized via tenfold cross-validation. Model performance across different feature sets was evaluated via the average AUC, F1 score, and other performance metrics. Results: LASSO regression revealed that BMI and volume within the 5–10 Gy and 10–20 Gy lung subregions were significant predictors of RP. The performance evaluation demonstrated that the dosiomics features consistently outperformed the DVH features across the models. Combining radiomics and dosiomics achieved the highest predictive accuracy (AUC = 0.91, ACC = 0.89, NPV = 0.95, PPV = 0.78, F1 score = 0.82, sensitivity = 0.88, specificity = 0.90). Applying SMOTE during training significantly improved sensitivity without compromising specificity, confirming the value of balancing strategies in enhancing model performance. Incorporating all the features together did not provide additional performance gains. Conclusions: Integrating radiomics and dosiomics features extracted from IDLSS-defined lung subregions significantly enhances the ability to predict RP after VMAT, surpassing traditional DVH metrics. The substantial contribution of dosiomics features highlights the importance of spatial dose heterogeneity in RP risk assessment.

18 September 2026 in Life
Verified
Journal Article
Open access
PDF file
GLGuang-Zhi Lin Lin
Guang-Zhi Lin Lin
YANG-WEI HSIEHYANG-WEI HSIEH
YANG-WEI HSIEH
CCChihYu Cheng
ChihYu Cheng
CWChen-Cheng Wang
Chen-Cheng Wang
LCLiyun Chang
Liyun Chang
Tsair-Fwu LEETsair-Fwu LEE
Tsair-Fwu LEE
Background: Radiotherapy-related complications can impair long-term outcomes in nasopharyngeal carcinoma (NPC), while high-volume literature screening remains a bottleneck in evidence synthesis. Methods: Four databases were searched through January 2026. After deduplication, 4916 records underwent two-stage manual screening, yielding 38 studies. Three Bidirectional Encoder Representations from Transformers (BERT) models, BERT-base, BioBERT, and PubMedBERT, were fine-tuned using stratified five-fold cross-validation, and screening performance was assessed using the area under the receiver operating characteristic curve (ROC-AUC), the area under the precision-recall curve (PR-AUC), and work saved over sampling (WSS) at the 100% and 85% recall thresholds (WSS@100% and WSS@85%).The clinical evidence was evaluated using the Prediction Model Risk of Bias Assessment Tool (PROBAST) and synthesized narratively according to endpoint, discrimination metric, time horizon, unit of analysis, validation level, and uncertainty reporting. Results: At complete recall, BioBERT and PubMedBERT achieved mean WSS values of 97.8% and 97.5%, respectively, compared with 89.7% for BERT-base. Separately, the clinical evidence review identified 39 discrimination estimates: 33 conventional binary ROC-AUCs, three Harrell’s C-indices, and three time-dependent AUCs. Only two studies contributed external-validation estimates and one contributed a temporal-validation estimate. Sixteen estimates lacked a usable measure of uncertainty, and PROBAST rated all studies as having a high overall risk of bias, driven by the analysis domain. Conclusions: Within the retrieved and manually annotated corpus, biomedical pretrained language models showed the potential to reduce the title-and-abstract screening burden while maintaining complete recall. Independently, the clinical evidence map identified promising discrimination but insufficiently robust and transportable evidence for routine clinical implementation.

31 July 2026 in Life
Verified
Journal Article
Open access
PDF file
Tsair-Fwu LEETsair-Fwu LEE
Tsair-Fwu LEE
GLGuang-Zhi Lin Lin
Guang-Zhi Lin Lin
WYWen-ping Yun
Wen-ping Yun
YLYi-Lun Liao
Yi-Lun Liao
LCLiyun Chang
Liyun Chang
YANG-WEI HSIEHYANG-WEI HSIEH
YANG-WEI HSIEH
Objective: This study aims to develop a preliminary explainable image-based auxiliary assessment framework for radiation pneumonitis (RP) by integrating a generative adversarial network (GAN), Gradient-weighted Class Activation Mapping (Grad-CAM), and ensemble learning to improve image-based classification performance, interpretability, and computational efficiency. Methods: Chest CT images from 46 lung cancer patients who underwent VMAT were retrospectively collected, yielding 542 RP and 1857 non-RP images. Images were preprocessed using Otsu-based segmentation and standardized before being input into the RP-GAN for feature extraction. Grad-CAM was applied to qualitatively visualize attention patterns across convolutional layers and guide feature-layer selection, while PCA reduced the extracted features from 12,288 to 730 dimensions. An ensemble stacking classifier combining RF, SVM, KNN, and XGBoost with logistic regression as a meta-learner was constructed. Model performance was evaluated using AUC, accuracy, PPV, NPV, specificity, recall, and F1-score. Results: Grad-CAM highlighted conv2d_4 and conv2d_5 as the most informative layers. PCA reduced training time from 49 min to 49 s with minimal performance loss. In the internal hold-out test set, the ensemble model achieved the highest point estimates for AUC and accuracy among the evaluated classifiers (AUC = 0.921; accuracy = 87.1%). The model identified RP-positive CT slices and provided qualitative visual cues for suspected RP-related regions. Conclusions: The proposed GAN–Grad-CAM ensemble framework showed promising internal classification performance for post-treatment CT-based RP image assessment with substantially improved computational efficiency. Its qualitative visual outputs may support clinical image review, although further external validation and quantitative localization assessment are required before clinical application as an auxiliary image-review tool.