Maize (Zea mays ssp. mays) domestication began in southwestern Mexico ∼9,000 calendar years before present (cal. BP) and humans dispersed this important grain to South America by at least 7,000 cal. BP as a partial domesticate. South America served as a secondary improvement center where the domestication syndrome became fixed and new lineages emerged in parallel with similar processes in Mesoamerica. Later, Indigenous cultivators carried a second major wave of maize southward from Mesoamerica, but it has been unclear until now whether the deeply divergent maize lineages underwent any subsequent gene flow between these regions. Here we report ancient maize genomes (2,300–1,900 cal. BP) from El Gigante rock shelter, Honduras, that are closely related to ancient and modern maize from South America. Our findings suggest that the second wave of maize brought into South America hybridized with long-established landraces from the first wave, and that some of the resulting newly admixed lineages were then reintroduced to Central America. Direct radiocarbon dates and cob morphological data from the rock shelter suggest that more productive maize varieties developed between 4,300 and 2,500 cal. BP. We hypothesize that the influx of maize from South America into Central America may have been an important source of genetic diversity as maize was becoming a staple grain in Central and Mesoamerica. Significance Maize is a global food staple with great economic and cultural importance. Archaeogenomic studies have revealed a process of protracted maize domestication and multiple waves of human-mediated dispersal in the Americas. Maize first arrived in South America as a partial domesticate, where the domestication syndrome became independently fixed and improved varieties developed away from the influence of wild gene flow. We demonstrate that hybrids of some of these improved varieties were likely reintroduced back to Central America. We hypothesize that this backflow of South American genetic material may have contributed to the development of a more productive staple, which was related to the growth and aggregation of human populations, and the formation of more complex social and political structures regionally.

In vascular plants, larger seeds are generally associated with higher germination potential, healthier seedlings and overall higher rates of survivorship. How this relationship holds or what other physiological tradeoffs evolved in plants adapted to high-altitude environments, such as the tropical and subtropical highlandPolylepistree, remain unclear. In this study, we evaluated the relationship between seed mass and seedling performance by testing the reserve effect, the metabolic effect, and the seedling-size effect hypotheses inPolylepis tomentellaWeddell (Rosaceae). Since the relationship between fitness and seed size can often depend on maternal plant size, we additionally investigated the association between germination success, seedling performance (survival, relative growth rate (RGR) and height), and size of bearing-seed trees under controlled greenhouse conditions. Our results showed that heavier seeds are more likely to germinate, but we did not find evidence that could support the reserve effect, metabolic effect or seedling-size effect. As seedlings from larger and medium seeds exhibited comparatively similar RGR, survival percentages and final size, maternal plant size was positively associated with improved seed quality and seedling performance. These results demonstrate that seed mass and maternal size during early seedling establishment are critical forPolylepispersistence, demography and conservation.

The European conquest of the New World produced major socio-environmental reorganization in the Americas, but for many specific regions and ecosystems, we still do not understand how these changes occurred within a broader temporal framework. In this paper, we reconstruct the long-term environmental and vegetation changes experienced by high-altitude wetlands of the southcentral Andes over the last two millennia. Pollen and charcoal analyses of a 5.5-m-long core recovered from the semi-arid puna of northern Chile indicate that while climatic drivers influenced vegetation turnaround, human land use and management strategies significantly affected long-term changes. Our results indicate that the puna vegetation mostly dominated by grasslands and some peatland taxa stabilized during the late Holocene, xerophytic shrubs expanded during extremely dry events, and peatland vegetation persisted in relation to landscape-scale management strategies by Andean pastoralist societies. Environmental changes produced during the post-conquest period included the introduction of exotic taxa, such as clovers, associated with the translocation of exotic herding animals (sheep, cattle, and donkeys) and a deterioration in the management of highland wetlands.

The floristic composition and distribution of plant communities is the product of species-specific responses to localized environmental conditions often structured following environmental gradients. Although the importance of Andean high-elevation wetlands (bofedales) for provisioning ecosystem services has been critically emphasized in various studies, very little is known about how different micro-environmental factors shape their zonation and community assembly. Here we examined and quantified differences in herbaceous plant composition, alpha diversity, and aboveground biomass within waterlogged and dry habitats in three bofedales located in western Bolivia. Our results show that although alpha diversity was similar between both habitats, obligate wetland taxa were more abundant in waterlogged habitats whereas upland graminoids and halophytes were predominant in desiccated habitats. Furthermore, aboveground biomass of obligate wetland graminoids was higher in waterlogged habitats, while saline tolerant forbs exhibited higher aboveground biomass in desiccated habitats. Together these results suggest that soil water and organic matter content largely governs plant composition and biomass production but not alpha diversity in the studied high-altitude Andean wetlands. These results have important consequences for predicting plant species’ response to changes in the hydrological cycle due to habitat degradation and aridification caused by land use intensification and global climate change.