Diatoms are eukaryotic unicellular plants that constitute one of the major components of marine phytoplankton, comprising up to 40% of annual productivity at sea and representing 25% of global carbon-fixation. Diatoms have traditionally been considered a preferential food for zooplankton grazers such as copepods, but, in the last two decades, this beneficial role has been challenged after the discovery that many species of diatoms produce toxic metabolites, collectively termed oxylipins, that induce reproductive failure in zooplankton grazers. Diatoms are the dominant natural diet of Calanus sinicus, a cold-temperate calanoid copepod that supports secondary production of important fisheries in the shelf ecosystems of the Northwest Pacific Ocean, Yellow Sea, Sea of Japan and South China Sea. In this study, the effect of the oxylipin-producing diatom Skeletonema marinoi on C. sinicus has been evaluated by analyzing expression level changes of genes involved in defense and detoxification systems. Results show that C. sinicus is more resistant to a diet of this diatom species in terms of gene expression patterns, compared to the congeneric species Calanus helgolandicus which is an important constituent of the temperate waters of the Atlantic Ocean and northern Mediterranean Sea. These findings contribute to the better understanding of genetic and/or phenotypic flexibility of copepod species and their capabilities to cope with stress by identifying molecular markers (such as stress and detoxification genes) as biosensors for environmental perturbations (e.g. toxins and contaminants) affecting marine copepods.

Copepods are the most abundant organisms in marine zooplankton and the primary components of the food chain. They are hotspots for highly adaptable microorganisms, which are pivotal in biogeochemical cycles. The microbiome, encompassing microorganisms within and surrounding marine planktonic organisms, holds considerable potential for biotechnological advancements. Despite marine microbiome research interests expanding, our understanding of the ecological interactions between microbiome and copepods remains limited. This review intends to give an overview of the recent studies regarding the microbiome associated with marine copepods, with particular focus on the diversity of bacteria and fungi. The significance of copepod-associated microbiomes in different contexts, such as aquaculture and biodegradation processes, was evaluated. The ability of the microbiome to mitigate harmful bacterial growth in cultured organisms was also explored. The microbiome associated with copepods has demonstrated efficacy in reducing the proliferation of detrimental bacteria in aquaculture, paving the way for the commercial utilization of natural zooplankton in fish rearing. Additionally, copepod-associated microbiomes may play a role in addressing marine environmental challenges, such as the bioremediation of polluted marine matrices. Overall, this review represents a basis for investigating intricate copepod-associated microbiomes and their diverse applications, enhancing our comprehension of the ecological and evolutionary significance of marine microbiomes.