Syed Hamad Shirazi

Dr. Syed Hamad Shirazi

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 January 2020 in Computational and Mathematical Methods in Medicine
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Journal Article
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MSMuhammad Shahzad
Muhammad Shahzad
AUArif Iqbal Umar
Arif Iqbal Umar
MKMuazzam A. Khan
Muazzam A. Khan
SSSyed Hamad Shirazi
Syed Hamad Shirazi
ZKZakir Khan
Zakir Khan
WYWaqas Yousaf
Waqas Yousaf
Previous works on segmentation of SEM (scanning electron microscope) blood cell image ignore the semantic segmentation approach of whole-slide blood cell segmentation. In the proposed work, we address the problem of whole-slide blood cell segmentation using the semantic segmentation approach. We design a novel convolutional encoder-decoder framework along with VGG-16 as the pixel-level feature extraction model. The proposed framework comprises 3 main steps: First, all the original images along with manually generated ground truth masks of each blood cell type are passed through the preprocessing stage. In the preprocessing stage, pixel-level labeling, RGB to grayscale conversion of masked image and pixel fusing, and unity mask generation are performed. After that, VGG16 is loaded into the system, which acts as a pretrained pixel-level feature extraction model. In the third step, the training process is initiated on the proposed model. We have evaluated our network performance on three evaluation metrics. We obtained outstanding results with respect to classwise, as well as global and mean accuracies. Our system achieved classwise accuracies of 97.45%, 93.34%, and 85.11% for RBCs, WBCs, and platelets, respectively, while global and mean accuracies remain 97.18% and 91.96%, respectively.

2 February 2024 in PeerJ Computer Science
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Journal Article
Open access
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MSMuhammad Shahzad
Muhammad Shahzad
FAFarman Ali
Farman Ali
SSSyed Hamad Shirazi
Syed Hamad Shirazi
ARAssad Rasheed
Assad Rasheed
AAAwais Ahmad
Awais Ahmad
Daehan KwakDaehan Kwak
Daehan Kwak
Background: Blood diseases such as leukemia, anemia, lymphoma, and thalassemia are hematological disorders that relate to abnormalities in the morphology and concentration of blood elements, specifically white blood cells (WBC) and red blood cells (RBC). Accurate and efficient diagnosis of these conditions significantly depends on the expertise of hematologists and pathologists. To assist the pathologist in the diagnostic process, there has been growing interest in utilizing computer-aided diagnostic (CAD) techniques, particularly those using medical image processing and machine learning algorithms. Previous surveys in this domain have been narrowly focused, often only addressing specific areas like segmentation or classification but lacking a holistic view like segmentation, classification, feature extraction, dataset utilization, evaluation matrices, etc. Methodology: This survey aims to provide a comprehensive and systematic review of existing literature and research work in the field of blood image analysis using deep learning techniques. It particularly focuses on medical image processing techniques and deep learning algorithms that excel in the morphological characterization of WBCs and RBCs. The review is structured to cover four main areas: segmentation techniques, classification methodologies, descriptive feature selection, evaluation parameters, and dataset selection for the analysis of WBCs and RBCs. Results: Our analysis reveals several interesting trends and preferences among researchers. Regarding dataset selection, approximately 50% of research related to WBC segmentation and 60% for RBC segmentation opted for manually obtaining images rather than using a predefined dataset. When it comes to classification, 45% of the previous work on WBCs chose the ALL-IDB dataset, while a significant 73% of researchers focused on RBC classification decided to manually obtain images from medical institutions instead of utilizing predefined datasets. In terms of feature selection for classification, morphological features were the most popular, being chosen in 55% and 80% of studies related to WBC and RBC classification, respectively. Conclusion: The diagnostic accuracy for blood-related diseases like leukemia, anemia, lymphoma, and thalassemia can be significantly enhanced through the effective use of CAD techniques, which have evolved considerably in recent years. This survey provides a broad and in-depth review of the techniques being employed, from image segmentation to classification, feature selection, utilization of evaluation matrices, and dataset selection. The inconsistency in dataset selection suggests a need for standardized, high-quality datasets to strengthen the diagnostic capabilities of these techniques further. Additionally, the popularity of morphological features indicates that future research could further explore and innovate in this direction.

12 February 2021 in BMJ Open Ophthalmology
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Journal Article
Open access
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ZKZakir Khan Khan
Zakir Khan Khan
AUArif Iqbal Umar
Arif Iqbal Umar
SSSyed Hamad Shirazi
Syed Hamad Shirazi
ARAsad Rasheed
Asad Rasheed
AQAbdul Qadir
Abdul Qadir
SGSarah Gul
Sarah Gul
Objective Meibomian gland dysfunction (MGD) is a primary cause of dry eye disease. Analysis of MGD, its severity, shapes and variation in the acini of the meibomian glands (MGs) is receiving much attention in ophthalmology clinics. Existing methods for diagnosing, detection and analysing meibomianitis are not capable to quantify the irregularities to IR (infrared) images of MG area such as light reflection, interglands and intraglands boundaries, the improper focus of the light and positioning, and eyelid eversion. Methods and analysis We proposed a model that is based on adversarial learning that is, conditional generative adversarial network that can overcome these blatant challenges. The generator of the model learns the mapping from the IR images of the MG to a confidence map specifying the probabilities of being a pixel of MG. The discriminative part of the model is responsible to penalise the mismatch between the IR images of the MG and confidence map. Furthermore, the adversarial learning assists the generator to produce a qualitative confidence map which is transformed into binary images with the help of fixed thresholding to fulfil the segmentation of MG. We identified MGs and interglands boundaries from IR images. Results This method is evaluated by meiboscoring, grading, Pearson correlation and Bland-Altman analysis. We also judged the quality of our method through average Pompeiu-Hausdorff distance, and Aggregated Jaccard Index. Conclusions This technique provides a significant improvement in the quantification of the irregularities to IR. This technique has outperformed the state-of-art results for the detection and analysis of the dropout area of MGD.

3 October 2023 in PLOS ONE
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Journal Article
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ARAssad Rasheed
Assad Rasheed
SSSyed Hamad Shirazi
Syed Hamad Shirazi
AUArif Iqbal Umar
Arif Iqbal Umar
MSMuhammad Shahzad
Muhammad Shahzad
WYWaqas Yousaf
Waqas Yousaf
ZKZakir Khan
Zakir Khan
Precise segmentation of the nucleus is vital for computer-aided diagnosis (CAD) in cervical cytology. Automated delineation of the cervical nucleus has notorious challenges due to clumped cells, color variation, noise, and fuzzy boundaries. Due to its standout performance in medical image analysis, deep learning has gained attention from other techniques. We have proposed a deep learning model, namely C-UNet (Cervical-UNet), to segment cervical nuclei from overlapped, fuzzy, and blurred cervical cell smear images. Cross-scale features integration based on a bi-directional feature pyramid network (BiFPN) and wide context unit are used in the encoder of classic UNet architecture to learn spatial and local features. The decoder of the improved network has two inter-connected decoders that mutually optimize and integrate these features to produce segmentation masks. Each component of the proposed C-UNet is extensively evaluated to judge its effectiveness on a complex cervical cell dataset. Different data augmentation techniques were employed to enhance the proposed model’s training. Experimental results have shown that the proposed model outperformed extant models, i.e., CGAN (Conditional Generative Adversarial Network), DeepLabv3, Mask-RCNN (Region-Based Convolutional Neural Network), and FCN (Fully Connected Network), on the employed dataset used in this study and ISBI-2014 (International Symposium on Biomedical Imaging 2014), ISBI-2015 datasets. The C-UNet achieved an object-level accuracy of 93%, pixel-level accuracy of 92.56%, object-level recall of 95.32%, pixel-level recall of 92.27%, Dice coefficient of 93.12%, and F1-score of 94.96% on complex cervical images dataset.

16 May 2022 in Applied Sciences
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Journal Article
Open access
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MSMuhammad Shahzad
Muhammad Shahzad
AUArif Iqbal Umar
Arif Iqbal Umar
SSSyed Hamad Shirazi
Syed Hamad Shirazi
ZKZakir Khan
Zakir Khan
AKAsfandyar Khan
Asfandyar Khan
EAEl-Awady Attia
El-Awady Attia
The automatic detection of blood cell elements for identifying morphological deformities is still a challenging research domain. It has a pivotal role in cognition and detecting the severity level of disease. Using a simple microscope, manual disease detection, and morphological disorders in blood cells is mostly time-consuming and erroneous. Due to the overlapped structure of RBCs, pathologists face challenges in differentiating between normal and abnormal cell shape and size precisely. Currently, convolutional neural network-based algorithms are effective tools for addressing this issue. Existing techniques fail to provide effective anemia detection, and severity level prediction due to RBCs’ dense and overlapped structure, non-availability of standard datasets related to blood diseases, and severity level detection techniques. This work proposed a three tier deep convolutional fused network (3-TierDCFNet) to extract optimum morphological features and identify anemic images to predict the severity of anemia. The proposed model comprises two modules: Module-I classifies the input image into two classes, i.e., Healthy and Anemic, while Module-II detects the anemia severity level and categorizes it into Mild or Chronic. After each tier’s training, a validation function is employed to reduce the inappropriate feature selection. To authenticate the proposed model for healthy, anemic RBC classification and anemia severity level detection, a state-of-the-art anemic and healthy RBC dataset was developed in collaboration with Shaukat Khanum Hospital and Research Center (SKMCH&RC), Pakistan. To evaluate the proposed model, the training, validation, and test accuracies were computed along with recall, F1-Score, and specificity. The global results reveal that the proposed model achieved 91.37%, 88.85%, and 86.06% training, validation, and test accuracies with 98.95%, 98.12%, and 98.12% recall F1-Score and specificity, respectively.

6 July 2022 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
ARAssad Rasheed
Assad Rasheed
AUArif Iqbal Umar
Arif Iqbal Umar
SSSyed Hamad Shirazi
Syed Hamad Shirazi
ZKZakir Khan
Zakir Khan
SNShah Nawaz
Shah Nawaz
MSMuhammad Shahzad
Muhammad Shahzad