Victor Marchenkov

Dr. Victor Marchenkov

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Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2019 in Biochemical and Biophysical Research Communications
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Journal Article
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AAAlexandra Artyukhina
Alexandra Artyukhina
AKAlexey Kazakov
Alexey Kazakov
ASA.S. Sokolov
A.S. Sokolov
ENEkaterina Nemashkalova
Ekaterina Nemashkalova
EGE.I. Galushko
E.I. Galushko
Eugene PermyakovEugene Permyakov
Eugene Permyakov

Verified
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VMVictor Marchenkov
Victor Marchenkov
Gennady SemisotnovGennady Semisotnov
Gennady Semisotnov
The folding of protein molecules in the GroEL inner cavity under the co-chaperonin GroES lid is widely accepted as a crucial event of GroEL-assisted protein folding. This review is focused on the data showing that GroEL-assisted protein folding may proceed out of the complex with the chaperonin. The models of GroEL-assisted protein folding assuming ligand-controlled dissociation of nonnative proteins from the GroEL surface and their folding in the bulk solution are also discussed.

Verified
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YCYaroslava Chalenko
Yaroslava Chalenko
EKEgor Kalinin
Egor Kalinin
VMVictor Marchenkov
Victor Marchenkov
ESElena Sysolyatina
Elena Sysolyatina
ASAlexey Surin
Alexey Surin
SESvetlana Ermolaeva
Svetlana Ermolaeva
The pathogenic Gram-positive bacterium Listeria monocytogenes has been evolving into a few phylogenetic lineages. Phylogenetically defined substitutions were described in the L. monocytogenes virulence factor InlB, which mediates active invasion into mammalian cells via interactions with surface receptors c-Met and gC1q-R. InlB internalin domain (idInlB) is central to interactions with c-Met. Here we compared activity of purified recombinant idInlB isoforms characteristic for L. monocytogenes phylogenetic lineage I and II. Size exclusion chromatography and intrinsic fluorescence were used to characterize idInlBs. Western blotting was used to study activation of c-Met-dependent MAPK- and PI3K/Akt-pathways. Solid-phase microplate binding and competition assay was used to quantify interactions with gCq1-R. Isogenic recombinant L. monocytogenes strains were used to elucidate the input of idInlB isoforms in HEp-2 cell invasion. Physicochemical parameters of idInlB isoforms were similar but not identical. Kinetics of Erk1/2 and Akt phosphorylation in response to purified idInlBs was lineage specific. Lineage I but not lineage II idInlB specifically bound gC1q-R. Antibody against gC1q-R amino acids 221–249 inhibited invasion of L. monocytogenes carrying lineage I but not lineage II idInlB. Taken together, obtained results suggested that phylogenetically defined substitutions in idInlB provide functional distinctions and might be involved in phylogenetically determined differences in virulence potential.

22 April 2014 in Biomolecules
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NRNatalia Ryabova
Natalia Ryabova
VMVictor Marchenkov
Victor Marchenkov
NKNina Kotova
Nina Kotova
Gennady SemisotnovGennady Semisotnov
Gennady Semisotnov
Chaperonin GroEL is a complex oligomeric heat shock protein (Hsp60) assisting the correct folding and assembly of other proteins in the cell. An intriguing question is how GroEL folds itself. According to the literature, GroEL reassembly is dependent on chaperonin ligands and solvent composition. Here we demonstrate dependence of GroEL reassembly efficiency on concentrations of the essential factors (Mg2+, ADP, ATP, GroES, ammonium sulfate, NaCl and glycerol). Besides, kinetics of GroEL oligomerization in various conditions was monitored by the light scattering technique and proved to be two-exponential, which suggested accumulation of a certain oligomeric intermediate. This intermediate was resolved as a heptamer by nondenaturing blue electrophoresis of GroEL monomers during their assembly in the presence of both Mg-ATP and co-chaperonin GroES. Presumably, this intermediate heptamer plays a key role in formation of the GroEL tetradecameric particle. The role of co-chaperonin GroES (Hsp10) in GroEL assembly is also discussed.

1 August 2021 in Journal of Chromatography A
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Journal Article
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OTOlga E. Trubetskaya
Olga E. Trubetskaya
OTOleg A. Trubetskoj
Oleg A. Trubetskoj
CRClaire Richard
Claire Richard
AVAlexey State Vervald
Alexey State Vervald
SBSergey A. Burikov
Sergey A. Burikov
TDTatiana A. Dolenko
Tatiana A. Dolenko

20 January 2020 in Biomolecules
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VMVictor Marchenkov
Victor Marchenkov
AGAndrey Gorokhovatsky
Andrey Gorokhovatsky
Natalia Y MarchenkoNatalia Y Marchenko
Natalia Y Marchenko
TITanya Ivashina
Tanya Ivashina
Gennady SemisotnovGennady Semisotnov
Gennady Semisotnov
The main events in chaperone-assisted protein folding are the binding and ligand-induced release of substrate proteins. Here, we studied the location of denatured proteins previously bound to the GroEL chaperonin resulting from the action of the GroES co-chaperonin in the presence of Mg-ATP. Fluorescein-labeled denatured proteins (α-lactalbumin, lysozyme, serum albumin, and pepsin in the presence of thiol reagents at neutral pH, as well as an early refolding intermediate of malate dehydrogenase) were used to reveal the effect of GroES on their interaction with GroEL. Native electrophoresis has demonstrated that these proteins tend to be released from the GroEL-GroES complex. With the use of biotin- and fluorescein-labeled denatured proteins and streptavidin fused with luciferase aequorin (the so-called streptavidin trap), the presence of denatured proteins in bulk solution after GroES and Mg-ATP addition has been confirmed. The time of GroES-induced dissociation of a denatured protein from the GroEL surface was estimated using the stopped-flow technique and found to be much shorter than the proposed time of the GroEL ATPase cycle.