Kibo Ote

Mr. Kibo Ote

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 January 2021 in Physics in Medicine & Biology
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FHFumio Hashimoto
Fumio Hashimoto
HOHiroyuki Ohba
Hiroyuki Ohba
KOKibo Ote
Kibo Ote
AKAkihiro Kakimoto
Akihiro Kakimoto
HTHideo Tsukada
Hideo Tsukada
YOYasuomi Ouchi
Yasuomi Ouchi
Although convolutional neural networks (CNNs) demonstrate the superior performance in denoising positron emission tomography (PET) images, a supervised training of the CNN requires a pair of large, high-quality PET image datasets. As an unsupervised learning method, a deep image prior (DIP) has recently been proposed; it can perform denoising with only the target image. In this study, we propose an innovative procedure for the DIP approach with a four-dimensional (4D) branch CNN architecture in end-to-end training to denoise dynamic PET images. Our proposed 4D CNN architecture can be applied to end-to-end dynamic PET image denoising by introducing a feature extractor and a reconstruction branch for each time frame of the dynamic PET image. In the proposed DIP method, it is not necessary to prepare high-quality and large patient-related PET images. Instead, a subject’s own static PET image is used as additional information, dynamic PET images are treated as training labels, and denoised dynamic PET images are obtained from the CNN outputs. Both simulation with [ 18 F]fluoro-2-deoxy-D-glucose (FDG) and preclinical data with [ 18 F]FDG and [ 11 C]raclopride were used to evaluate the proposed framework. The results showed that our 4D DIP framework quantitatively and qualitatively outperformed 3D DIP and other unsupervised denoising methods. The proposed 4D DIP framework thus provides a promising procedure for dynamic PET image denoising.

22 March 2022 in IEEE Transactions on Radiation and Plasma Medical Sciences
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Journal Article
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FHFumio Hashimoto
Fumio Hashimoto
KOKibo Ote
Kibo Ote
YOYuya Onishi
Yuya Onishi
Convolutional neural networks (CNNs) have recently achieved remarkable performance in positron emission tomography (PET) image reconstruction. In particular, CNN-based PET image reconstruction, which directly generates the reconstructed image from a sinogram, has potential applicability in PET image enhancement because it does not require image reconstruction algorithms, which often produce artifacts. However, these deep learning-based PET image reconstruction algorithms have the disadvantage that they require a large number of high-quality training datasets. In this study, we propose an unsupervised PET image reconstruction method that incorporates a deep image prior (DIP) framework. Our proposed method incorporates a forward projection model with a loss function to achieve unsupervised PET image reconstruction from sinograms. To compare our proposed image reconstruction method with filtered back projection (FBP), maximum likelihood expectation maximization (ML-EM), and the other DIP-based reconstruction algorithm, we evaluated our method using Monte Carlo simulation data of a brain 18FFDG PET scan and real data of a rhesus monkey brain 18FFDG PET scan. The results demonstrate that our proposed image reconstruction method quantitatively and qualitatively outperforms the FBP and ML-EM algorithms; furthermore, it showed comparable performance and faster calculation time compared to the other DIP-based image reconstruction method.

25 January 2023 in IEEE Transactions on Medical Imaging
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Journal Article
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KOKibo Ote
Kibo Ote
FHFumio Hashimoto
Fumio Hashimoto
YOYuya Onishi
Yuya Onishi
TITakashi Isobe
Takashi Isobe
YOYasuomi Ouchi
Yasuomi Ouchi
List-mode positron emission tomography (PET) image reconstruction is an important tool for PET scanners with many lines-of-response and additional information such as time-of-flight and depth-of-interaction. Deep learning is one possible solution to enhance the quality of PET image reconstruction. However, the application of deep learning techniques to list-mode PET image reconstruction has not been progressed because list data is a sequence of bit codes and unsuitable for processing by convolutional neural networks (CNN). In this study, we propose a novel list-mode PET image reconstruction method using an unsupervised CNN called deep image prior (DIP) which is the first trial to integrate list-mode PET image reconstruction and CNN. The proposed list-mode DIP reconstruction (LM-DIPRecon) method alternatively iterates the regularized list-mode dynamic row action maximum likelihood algorithm (LM-DRAMA) and magnetic resonance imaging conditioned DIP (MR-DIP) using an alternating direction method of multipliers. We evaluated LM-DIPRecon using both simulation and clinical data, and it achieved sharper images and better tradeoff curves between contrast and noise than the LM-DRAMA, MR-DIP and sinogram-based DIPRecon methods. These results indicated that the LM-DIPRecon is useful for quantitative PET imaging with limited events while keeping accurate raw data information. In addition, as list data has finer temporal information than dynamic sinograms, list-mode deep image prior reconstruction is expected to be useful for 4D PET imaging and motion correction.

11 February 2022 in Physics in Medicine & Biology
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Journal Article
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YOYuya Onishi
Yuya Onishi
FHFumio Hashimoto
Fumio Hashimoto
KOKibo Ote
Kibo Ote
RORyosuke Ota
Ryosuke Ota
Objective. Convolutional neural networks (CNNs) are a strong tool for improving the coincidence time resolution (CTR) of time-of-flight (TOF) positron emission tomography detectors. However, several signal waveforms from multiple source positions are required for CNN training. Furthermore, there is concern that TOF estimation is biased near the edge of the training space, despite the reduced estimation variance (i.e. timing uncertainty). Approach. We propose a simple method for unbiased TOF estimation by combining a conventional leading-edge discriminator (LED) and a CNN that can be trained with waveforms collected from one source position. The proposed method estimates and corrects the time difference error calculated by the LED rather than the absolute time difference. This model can eliminate the TOF estimation bias, as the combination with the LED converts the distribution of the label data from discrete values at each position into a continuous symmetric distribution. Main results. Evaluation results using signal waveforms collected from scintillation detectors show that the proposed method can correctly estimate all source positions without bias from a single source position. Moreover, the proposed method improves the CTR of the conventional LED. Significance. We believe that the improved CTR will not only increase the signal-to-noise ratio but will also contribute significantly to a part of the direct positron emission imaging.

8 February 2022 in Radiological Physics and Technology
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Journal Article
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KOKibo Ote
Kibo Ote
FHFumio Hashimoto
Fumio Hashimoto

21 July 2023 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
FHFumio Hashimoto
Fumio Hashimoto
YOYuya Onishi
Yuya Onishi
KOKibo Ote
Kibo Ote
HTHideaki Tashima
Hideaki Tashima
TYTaiga Yamaya
Taiga Yamaya
Objective . Deep image prior (DIP) has recently attracted attention owing to its unsupervised positron emission tomography (PET) image reconstruction method, which does not require any prior training dataset. In this paper, we present the first attempt to implement an end-to-end DIP-based fully 3D PET image reconstruction method that incorporates a forward-projection model into a loss function. Approach . A practical implementation of a fully 3D PET image reconstruction could not be performed at present because of a graphics processing unit memory limitation. Consequently, we modify the DIP optimization to a block iteration and sequential learning of an ordered sequence of block sinograms. Furthermore, the relative difference penalty (RDP) term is added to the loss function to enhance the quantitative accuracy of the PET image. Main results . We evaluated our proposed method using Monte Carlo simulation with [ 18 F]FDG PET data of a human brain and a preclinical study on monkey-brain [ 18 F]FDG PET data. The proposed method was compared with the maximum-likelihood expectation maximization (EM), maximum a posteriori EM with RDP, and hybrid DIP-based PET reconstruction methods. The simulation results showed that, compared with other algorithms, the proposed method improved the PET image quality by reducing statistical noise and better preserved the contrast of brain structures and inserted tumors. In the preclinical experiment, finer structures and better contrast recovery were obtained with the proposed method. Significance. The results indicated that the proposed method could produce high-quality images without a prior training dataset. Thus, the proposed method could be a key enabling technology for the straightforward and practical implementation of end-to-end DIP-based fully 3D PET image reconstruction.