Dan Yi

Dr. Dan Yi

University of Arizona College of Medicine - Phoenix
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 January 2016 in Free Radical Research
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Journal Article
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MSMilena Barcza Stockler-Pinto
Milena Barcza Stockler-Pinto
JSJuliana F. Saldanha
Juliana F. Saldanha
DYDan Yi
Dan Yi
Denise MafraDenise Mafra
Denise Mafra
DFDenis Fouque
Denis Fouque
CSChristophe O. Soulage
Christophe O. Soulage
Inflammation and oxidative stress are common features of patients with chronic kidney disease (CKD) and many uremic solutes retained in these patients could be involved in these processes, among which protein bound solutes such as indoxyl-sulfate. White adipose tissue recently gained attention as an important source of inflammation and oxidative stress. To examine the effect of indoxyl sulfate on adipocytes, 3T3-L1 adipose cells were incubated with indoxyl sulfate to mimic the conditions encountered in uremic patients. Incubation of adipose cells with indoxyl-sulfate increased reactive oxygen species (ROS) production generated mainly through activation of NADPH oxidase since it was prevented by the NADPH oxidase inhibitor apocynin. Exposure to indoxyl sulfate furthermore exacerbated the secretion of tumor necrosis factor-α and interleukin-6 by adipose cells. This inflammatory response was prevented by NADPH oxidase inhibition pinpointing the pivotal role of intracellular oxidative stress. Indoxyl ...

13 December 2012 in Molecules
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Journal Article
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YBYuhua Bai
Yuhua Bai
PLPing Lu
Ping Lu
CHChenghua Han
Chenghua Han
CYChunyue Yu
Chunyue Yu
MCMinggang Chen
Minggang Chen
LWLijun Wu
Lijun Wu
Flowers of Carthamus tinctorius L. are traditionally used in China to treat cerebrovascular and cardiovascular diseases. Hydroxysafflor yellow A (HSYA), the main constituent of Carthamus tinctorius L. flowers, is known for its multiple biological activities. In the present study, HSYA was isolated from Carthamus tinctorius L. flowers by a macroporous resin adsorption chromatography method coupled with a Waters high-throughput auto-purification system and it's vasodilatation effects on pulmonary artery (PA) were explored by an assay of tension study on rat pulmonary artery (PA) rings. Results suggest that HSYA possesses vascular relaxation effects on rat PA by activating the KV channel in pulmonary vascular smooth muscle cells (PVSMCs).

26 March 2020 in Kidney360
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Journal Article
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ELEsther Liu
Esther Liu
BRBehram Radmanesh
Behram Radmanesh
BCByungha H. Chung
Byungha H. Chung
MDMichael D. Donnan
Michael D. Donnan
DYDan Yi
Dan Yi
JLJennie Lin
Jennie Lin
Background: DNA variants in APOL1 associate with kidney disease, but the pathophysiologic mechanisms remain incompletely understood. Model organisms lack the APOL1 gene, limiting the degree to which disease states can be recapitulated. Here we present single-cell RNA sequencing (scRNA-seq) of genome-edited human kidney organoids as a platform for profiling effects of APOL1 risk variants in diverse nephron cell types. Methods: We performed footprint-free CRISPR-Cas9 genome editing of human induced pluripotent stem cells (iPSCs) to knock in APOL1 high-risk G1 variants at the native genomic locus. iPSCs were differentiated into kidney organoids, treated with vehicle, IFN-γ, or the combination of IFN-γ and tunicamycin, and analyzed with scRNA-seq to profile cell-specific changes in differential gene expression patterns, compared with isogenic G0 controls. Results: Both G0 and G1 iPSCs differentiated into kidney organoids containing nephron-like structures with glomerular epithelial cells, proximal tubules, distal tubules, and endothelial cells. Organoids expressed detectable APOL1 only after exposure to IFN-γ. scRNA-seq revealed cell type–specific differences in G1 organoid response to APOL1 induction. Additional stress of tunicamycin exposure led to increased glomerular epithelial cell dedifferentiation in G1 organoids. Conclusions: Single-cell transcriptomic profiling of human genome-edited kidney organoids expressing APOL1 risk variants provides a novel platform for studying the pathophysiology of APOL1-mediated kidney disease.

1 January 2018 in Biochimie
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Journal Article
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NFNans Florens
Nans Florens
DYDan Yi
Dan Yi
LJLaurent Juillard
Laurent Juillard
CSChristophe O. Soulage
Christophe O. Soulage

22 December 2022 in European Respiratory Journal
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Journal Article
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BLBin Liu
Bin Liu
YPYi Peng
Yi Peng
DYDan Yi
Dan Yi
NMNarsa Machireddy
Narsa Machireddy
DDDaoyin Dong
Daoyin Dong
YZYouyang Zhao
Youyang Zhao
Background: Nitrative stress is a characteristic feature of the pathology of human pulmonary arterial hypertension. However, the role of nitrative stress in the pathogenesis of obliterative vascular remodelling and severe pulmonary arterial hypertension remains largely unclear.Method: Our recently identified novel mouse model (Egln1Tie2Cre, Egln1encoding prolyl hydroxylase 2 (PHD2)) has obliterative vascular remodelling and right heart failure, making it an excellent model to use in this study to examine the role of nitrative stress in obliterative vascular remodelling.Results: Nitrative stress was markedly elevated whereas endothelial caveolin-1 (Cav1) expression was suppressed in the lungs ofEgln1Tie2Cremice. Treatment with a superoxide dismutase mimetic, manganese (III) tetrakis (1-methyl-4-pyridyl) porphyrin pentachloride or endothelialNos3knockdown using endothelial cell-targeted nanoparticle delivery of CRISPR–Cas9/guide RNA plasmid DNA inhibited obliterative pulmonary vascular remodelling and attenuated severe pulmonary hypertension inEgln1Tie2Cremice. Genetic restoration of Cav1 expression inEgln1Tie2Cremice normalised nitrative stress, reduced pulmonary hypertension and improved right heart function.Conclusion: These data suggest that suppression of Cav1 expression secondary to PHD2 deficiency augments nitrative stress through endothelial nitric oxide synthase activation, which contributes to obliterative vascular remodelling and severe pulmonary hypertension. Thus, a reactive oxygen/nitrogen species scavenger might have therapeutic potential for the inhibition of obliterative vascular remodelling and severe pulmonary arterial hypertension.

30 July 2024 in Circulation
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Journal Article
Closed access
BIN LIUBIN LIU
BIN LIU
DYDan Yi
Dan Yi
XXXiaomei Xia
Xiaomei Xia
KRKarina Ramirez
Karina Ramirez
HZHanqiu Zhao
Hanqiu Zhao
ZDZhiyu Dai
Zhiyu Dai