Halilibrahim Ciftci

Prof. Dr. Halilibrahim Ciftci

Koç University, Istanbul, İstanbul, Turkey (Türkiye)
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2019 in European Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
Belgin SeverBelgin Sever
Belgin Sever
Mehlika Dilek AltıntopMehlika Dilek Altıntop
Mehlika Dilek Altıntop
Mohamed O. RadwanMohamed O. Radwan
Mohamed O. Radwan
Ahmet ÖzdemirAhmet Özdemir
Ahmet Özdemir
MOMasami Otsuka
Masami Otsuka
Halilibrahim CiftciHalilibrahim Ciftci
Halilibrahim Ciftci

Verified
Journal Article
Open access
PDF file
Belgin SeverBelgin Sever
Belgin Sever
Halilibrahim CiftciHalilibrahim Ciftci
Halilibrahim Ciftci
Hasan DeMirciHasan DeMirci
Hasan DeMirci
HSHilal Sever
Hilal Sever
FOFirdevs Ocak
Firdevs Ocak
A. Nazlı BaşakA. Nazlı Başak
A. Nazlı Başak
Amyotrophic lateral sclerosis (ALS) is a rapidly debilitating fatal neurodegenerative disorder, causing muscle atrophy and weakness, which leads to paralysis and eventual death. ALS has a multifaceted nature affected by many pathological mechanisms, including oxidative stress (also via protein aggregation), mitochondrial dysfunction, glutamate-induced excitotoxicity, apoptosis, neuroinflammation, axonal degeneration, skeletal muscle deterioration and viruses. This complexity is a major obstacle in defeating ALS. At present, riluzole and edaravone are the only drugs that have passed clinical trials for the treatment of ALS, notwithstanding that they showed modest benefits in a limited population of ALS. A dextromethorphan hydrobromide and quinidine sulfate combination was also approved to treat pseudobulbar affect (PBA) in the course of ALS. Globally, there is a struggle to prevent or alleviate the symptoms of this neurodegenerative disease, including implementation of antisense oligonucleotides (ASOs), induced pluripotent stem cells (iPSCs), CRISPR-9/Cas technique, non-invasive brain stimulation (NIBS) or ALS-on-a-chip technology. Additionally, researchers have synthesized and screened new compounds to be effective in ALS beyond the drug repurposing strategy. Despite all these efforts, ALS treatment is largely limited to palliative care, and there is a strong need for new therapeutics to be developed. This review focuses on and discusses which therapeutic strategies have been followed so far and what can be done in the future for the treatment of ALS.

Verified
Journal Article
Open access
PDF file
Belgin SeverBelgin Sever
Belgin Sever
MOMasami Otsuka
Masami Otsuka
Mikako FujitaMikako Fujita
Mikako Fujita
Halilibrahim CiftciHalilibrahim Ciftci
Halilibrahim Ciftci
Acquired immunodeficiency syndrome (AIDS) is an enormous global health threat stemming from human immunodeficiency virus (HIV-1) infection. Up to now, the tremendous advances in combination antiretroviral therapy (cART) have shifted HIV-1 infection from a fatal illness into a manageable chronic disorder. However, the presence of latent reservoirs, the multifaceted nature of HIV-1, drug resistance, severe off-target effects, poor adherence, and high cost restrict the efficacy of current cART targeting the distinct stages of the virus life cycle. Therefore, there is an unmet need for the discovery of new therapeutics that not only bypass the limitations of the current therapy but also protect the body’s health at the same time. The main goal for complete HIV-1 eradication is purging latently infected cells from patients’ bodies. A potential strategy called “lock-in and apoptosis” targets the budding phase of the life cycle of the virus and leads to susceptibility to apoptosis of HIV-1 infected cells for the elimination of HIV-1 reservoirs and, ultimately, for complete eradication. The current work intends to present the main advantages and disadvantages of United States Food and Drug Administration (FDA)-approved anti-HIV-1 drugs as well as plausible strategies for the design and development of more anti-HIV-1 compounds with better potency, favorable pharmacokinetic profiles, and improved safety issues.

27 December 2017 in Molecules
Verified
Journal Article
Open access
PDF file
Mehlika Dilek AltıntopMehlika Dilek Altıntop
Mehlika Dilek Altıntop
Halilibrahim CiftciHalilibrahim Ciftci
Halilibrahim Ciftci
Mohamed O. RadwanMohamed O. Radwan
Mohamed O. Radwan
Belgin SeverBelgin Sever
Belgin Sever
ZKZafer Asım Kaplancıklı
Zafer Asım Kaplancıklı
Ahmet ÖzdemirAhmet Özdemir
Ahmet Özdemir
In an attempt to develop potent antitumor agents, new 1,3,4-thiadiazole derivatives were synthesized and evaluated for their cytotoxic effects on multiple human cancer cell lines, including the K562 chronic myelogenous leukemia cell line that expresses the Bcr-Abl tyrosine kinase. N-(5-Nitrothiazol-2-yl)-2-((5-((4-(trifluoromethyl)phenyl)amino)-1,3,4-thiadiazol-2-yl)thio)acetamide (2) inhibited the Abl protein kinase with an IC50 value of 7.4 µM and showed selective activity against the Bcr-Abl positive K562 cell line. Furthermore, a Bcr-Abl-compound 2 molecular modelling simulation highlighted the anchoring role of the nitrothiazole moiety in bonding and hydrophobic interaction with the key amino acid residues. These results provide promising starting points for further development of novel kinase inhibitors.

7 November 2020 in Molecules
Verified
Journal Article
Open access
PDF file
Belgin SeverBelgin Sever
Belgin Sever
Mehlika Dilek AltıntopMehlika Dilek Altıntop
Mehlika Dilek Altıntop
Ahmet ÖzdemirAhmet Özdemir
Ahmet Özdemir
GÇGülşen Akalın Akalın Çiftçi
Gülşen Akalın Akalın Çiftçi
DEDoha Elsayed
Doha Elsayed
TATaha Ali
Taha Ali
Epidermal growth factor receptor (EGFR) and cyclooxygenase-2 (COX-2) are crucial targetable enzymes in cancer management. Therefore, herein, new 2-[(5-((1H-indol-3-yl)methyl)-1,3,4-oxadiazol-2-yl)thio]-N-(thiazol/benzothiazol-2-yl)acetamides (2a–i) were designed and synthesized as EGFR and COX-2 inhibitors. The cytotoxic effects of compounds 2a–i on HCT116 human colorectal carcinoma, A549 human lung adenocarcinoma, and A375 human melanoma cell lines were determined using MTT assay. 2-[(5-((1H-Indol-3-yl)methyl)-1,3,4-oxadiazol-2-yl)thio]-N-(6-ethoxybenzothiazol-2-yl)acetamide (2e) exhibited the most significant anticancer activity against HCT116, A549, and A375 cell lines with IC50 values of 6.43 ± 0.72 μM, 9.62 ± 1.14 μM, and 8.07 ± 1.36 μM, respectively, when compared with erlotinib (IC50 = 17.86 ± 3.22 μM, 19.41 ± 2.38 μM, and 23.81 ± 4.17 μM, respectively). Further mechanistic assays demonstrated that compound 2e enhanced apoptosis (28.35%) in HCT116 cells more significantly than erlotinib (7.42%) and caused notable EGFR inhibition with an IC50 value of 2.80 ± 0.52 μM when compared with erlotinib (IC50 = 0.04 ± 0.01 μM). However, compound 2e did not cause any significant COX-2 inhibition, indicating that this compound showed COX-independent anticancer activity. The molecular docking study of compound 2e emphasized that the benzothiazole ring of this compound occupied the allosteric pocket in the EGFR active site. In conclusion, compound 2e is a promising EGFR inhibitor that warrants further clinical investigations.

4 November 2016 in Nature Communications
Verified
Journal Article
Open access
MHMark S. Hunter
Mark S. Hunter
CYChun Hong Yoon
Chun Hong Yoon
Hasan DeMirciHasan DeMirci
Hasan DeMirci
RSRaymond G. Sierra
Raymond G. Sierra
EDE. Han Dao
E. Han Dao
SBSébastien Boutet
Sébastien Boutet
Structural information about biological macromolecules near the atomic scale provides important insight into the functions of these molecules. To date, X-ray crystallography has been the predominant method used for macromolecular structure determination. However, challenges exist when solving structures with X-rays, including the phase problem and radiation damage. X-ray-free electron lasers (X-ray FELs) have enabled collection of diffraction information before the onset of radiation damage, yet the majority of structures solved at X-ray FELs have been phased using external information via molecular replacement. De novo phasing at X-ray FELs has proven challenging due in part to per-pulse variations in intensity and wavelength. Here we report the solution of a selenobiotinyl-streptavidin structure using phases obtained by the anomalous diffraction of selenium measured at a single wavelength (Se-SAD) at the Linac Coherent Light Source. Our results demonstrate Se-SAD, routinely employed at synchrotrons for novel structure determination, is now possible at X-ray FELs.