This study evaluated the acute toxicity and attachment inhibition effects of five novel nonoxidizing circulating water treatment agents on key marine fouling organisms, namely Crassostrea gigas eyed larvae and Mytilus edulis spat, aiming to screen ecofriendly and efficient antifouling agents for nuclear power cooling systems. A 96 h semistatic acute toxicity assay was adopted combined with byssal secretion parameter determination, and data were analyzed using probit analysis, independent samples t-tests, and ANOVA. The test organisms, C. gigas eyed larvae (shell length ≈ 200 μm, actively swimming) and M. edulis spat (shell length 1–2 cm, intact shell, healthy), were acclimated under controlled conditions (25 ± 0.5 °C, salinity 20 ± 1, DO ≥ 6 mg/L, 12L:12D photoperiod). Five agents containing different alkylamine and polyoxyethylene ether components were tested at gradient concentrations (0–1.92 mg/L for C. gigas larvae and 0–18 mg/L for M. edulis spat), with 50% test solution renewal every 24 h. The measured indicators included 96 h LC₅₀, safe concentrations, attachment inhibition rates, and M. edulis byssal secretion parameters (number, total length, diameter of byssal threads, and shedding frequency). All agents showed significant dose dependent toxicity ( P < 0.05). For C. gigas larvae, the toxicity was ranked as Agent 4 > Agent 2 > Agent 5 > Agent 3 > Agent 1, with 96 h LC₅₀ ranging from 0.13 to 1.00 mg/L, while for M. edulis spat, the toxicity was ranked as Agent 3 > Agent 2 > Agent 5 > Agent 1 > Agent 4, with 96 h LC₅₀ ranging from 7.65 to 9.74 mg/L. Agent 3 significantly reduced the number, length, and diameter of M. edulis byssal threads and increased shedding frequency ( P < 0.05) through a dual inhibition mechanism by interfering with byssal protein synthesis and substrate adhesion. Overall, Agent 3 exhibited balanced antifouling efficacy and environmental safety, and is recommended at 15 mg/L for biofouling control in nuclear power cooling systems to avoid the toxic byproducts of traditional oxidizing agents.