André Ferreira

Mr. André Ferreira

University of Minho, Braga, Portugal
orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 February 2024 in Medical Image Analysis
Verified
Journal Article
Open access
AFAndré Ferreira
André Ferreira
JLJianning Li
Jianning Li
KPKelsey L. Pomykala
Kelsey L. Pomykala
JKJens Kleesiek
Jens Kleesiek
VAVictor Alves
Victor Alves
JEJan Egger
Jan Egger
With the massive proliferation of data-driven algorithms, such as deep learning-based approaches, the availability of high-quality data is of great interest. Volumetric data is very important in medicine, as it ranges from disease diagnoses to therapy monitoring. When the dataset is sufficient, models can be trained to help doctors with these tasks. Unfortunately, there are scenarios where large amounts of data is unavailable. For example, rare diseases and privacy issues can lead to restricted data availability. In non-medical fields, the high cost of obtaining enough high-quality data can also be a concern. A solution to these problems can be the generation of realistic synthetic data using Generative Adversarial Networks (GANs). The existence of these mechanisms is a good asset, especially in healthcare, as the data must be of good quality, realistic, and without privacy issues. Therefore, most of the publications on volumetric GANs are within the medical domain. In this review, we provide a summary of works that generate realistic volumetric synthetic data using GANs. We therefore outline GAN-based methods in these areas with common architectures, loss functions and evaluation metrics, including their advantages and disadvantages. We present a novel taxonomy, evaluations, challenges, and research opportunities to provide a holistic overview of the current state of volumetric GANs.

28 December 2024
Verified
Book Chapter
Closed access
PDF file
AFAndré Ferreira
André Ferreira
NSNaida Solak
Naida Solak
JLJianning Li
Jianning Li
PDPhilipp Dammann
Philipp Dammann
JKJens Kleesiek
Jens Kleesiek
JEJan Egger
Jan Egger

19 May 2022 in Neural Computing and Applications
Verified
Journal Article
Closed access
PDF file
GCGabriel Coelho
Gabriel Coelho
Luís Miguel MatosLuís Miguel Matos
Luís Miguel Matos
PPPedro José Pereira
Pedro José Pereira
AFAndré Ferreira
André Ferreira
APAndré Luiz Pilastri
André Luiz Pilastri
PCPaulo Cortez
Paulo Cortez

8 November 2022 in Diagnostics
Verified
Journal Article
Open access
PDF file
MGMaria Gonçalves
Maria Gonçalves
CSChristina Schwarz-Gsaxner
Christina Schwarz-Gsaxner
AFAndré Ferreira
André Ferreira
JLJianning Li
Jianning Li
BPBehrus Puladi
Behrus Puladi
VAVictor Alves
Victor Alves
Head and neck cancer has great regional anatomical complexity, as it can develop in different structures, exhibiting diverse tumour manifestations and high intratumoural heterogeneity, which is highly related to resistance to treatment, progression, the appearance of metastases, and tumour recurrences. Radiomics has the potential to address these obstacles by extracting quantitative, measurable, and extractable features from the region of interest in medical images. Medical imaging is a common source of information in clinical practice, presenting a potential alternative to biopsy, as it allows the extraction of a large number of features that, although not visible to the naked eye, may be relevant for tumour characterisation. Taking advantage of machine learning techniques, the set of features extracted when associated with biological parameters can be used for diagnosis, prognosis, and predictive accuracy valuable for clinical decision-making. Therefore, the main goal of this contribution was to determine to what extent the features extracted from Computed Tomography (CT) are related to cancer prognosis, namely Locoregional Recurrences (LRs), the development of Distant Metastases (DMs), and Overall Survival (OS). Through the set of tumour characteristics, predictive models were developed using machine learning techniques. The tumour was described by radiomic features, extracted from images, and by the clinical data of the patient. The performance of the models demonstrated that the most successful algorithm was XGBoost, and the inclusion of the patients’ clinical data was an asset for cancer prognosis. Under these conditions, models were created that can reliably predict the LR, DM, and OS status, with the area under the ROC curve (AUC) values equal to 0.74, 0.84, and 0.91, respectively. In summary, the promising results obtained show the potential of radiomics, once the considered cancer prognosis can, in fact, be expressed through CT scans.

18 June 2024 in Clinical Oral Investigations
Verified
Journal Article
Open access
PDF file
IMIla Motmaen
Ila Motmaen
KXKunpeng Xie
Kunpeng Xie
LSLeon Schönbrunn
Leon Schönbrunn
JBJeff Berens
Jeff Berens
KGKim Grunert
Kim Grunert
BPBehrus Puladi
Behrus Puladi
Objectives: Tooth extraction is one of the most frequently performed medical procedures. The indication is based on the combination of clinical and radiological examination and individual patient parameters and should be made with great care. However, determining whether a tooth should be extracted is not always a straightforward decision. Moreover, visual and cognitive pitfalls in the analysis of radiographs may lead to incorrect decisions. Artificial intelligence (AI) could be used as a decision support tool to provide a score of tooth extractability. Material and methods: Using 26,956 single teeth images from 1,184 panoramic radiographs (PANs), we trained a ResNet50 network to classify teeth as either extraction-worthy or preservable. For this purpose, teeth were cropped with different margins from PANs and annotated. The usefulness of the AI-based classification as well that of dentists was evaluated on a test dataset. In addition, the explainability of the best AI model was visualized via a class activation mapping using CAMERAS. Results: The ROC-AUC for the best AI model to discriminate teeth worthy of preservation was 0.901 with 2% margin on dental images. In contrast, the average ROC-AUC for dentists was only 0.797. With a 19.1% tooth extractions prevalence, the AI model's PR-AUC was 0.749, while the dentist evaluation only reached 0.589. Conclusion: AI models outperform dentists/specialists in predicting tooth extraction based solely on X-ray images, while the AI performance improves with increasing contextual information. Clinical relevance: AI could help monitor at-risk teeth and reduce errors in indications for extractions.

11 May 2022 in Applied Sciences
Verified
Journal Article
Open access
PDF file
AFAndré Ferreira
André Ferreira
RMRicardo Rodrigues Magalhães
Ricardo Rodrigues Magalhães
SMSébastien Mériaux
Sébastien Mériaux
VAVictor Alves
Victor Alves
Translational brain research using Magnetic Resonance Imaging (MRI) is becoming increasingly popular as animal models are an essential part of scientific studies and more ultra-high-field scanners are becoming available. Some disadvantages of MRI are the availability of MRI scanners and the time required for a full scanning session. Privacy laws and the 3Rs ethics rule also make it difficult to create large datasets for training deep learning models. To overcome these challenges, an adaptation of the alpha Generative Adversarial Networks (GANs) architecture was used to test its ability to generate realistic 3D MRI scans of the rat brain in silico. As far as the authors are aware, this was the first time a GAN-based approach was used to generate synthetic MRI data of the rat brain. The generated scans were evaluated using various quantitative metrics, a Turing test, and a segmentation test. The last two tests proved the realism and applicability of the generated scans to real problems. Therefore, by using the proposed new normalisation layer and loss functions, it was possible to improve the realism of the generated rat MRI scans, and it was shown that using the generated data improved the segmentation model more than using the conventional data augmentation.