Deepak A Yaraguppi

Dr. Deepak A Yaraguppi

KLE Technological University, Hubli, India
orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2023 in Saudi Journal of Biological Sciences
Verified
Journal Article
Open access
ZBZabin K. Bagewadi
Zabin K. Bagewadi
Yunus Khan T. M.Yunus Khan T. M.
Yunus Khan T. M.
BGBhavya Gangadharappa
Bhavya Gangadharappa
AKAnkita Kamalapurkar
Ankita Kamalapurkar
SSshaik mohamed shamsudeen
shaik mohamed shamsudeen
DYDeepak A Yaraguppi
Deepak A Yaraguppi
Micrococcus luteus, also known as M. luteus, is a bacterium that inhabits mucous membranes, human skin, and various environmental sources. It is commonly linked to infections, especially among individuals who have compromised immune systems. M. luteus is capable of synthesizing the enzyme superoxide dismutase (SOD) as a component of its protective response to reactive oxygen species (ROS). This enzyme serves as a promising target for drug development in various diseases. The current study utilized a subtractive genomics approach to identify potential therapeutic targets from M. luteus. Additionally, genome mining was employed to identify and characterize the biosynthetic gene clusters (BGCs) responsible for the production of secondary metabolites in Bacillus licheniformis (B. licheniformis), a bacterium known for its production of therapeutically relevant secondary metabolites. Subtractive genomics resulted in identification of important extracellular protein SOD as a drug target that plays a crucial role in shielding cells from damage caused by ROS. Genome mining resulted in identification of five potential ligands (secondary metabolites) from B. licheniformis such as, Bacillibactin (BAC), Paenibactin (PAE), Fengycin (FEN), Surfactin (SUR) and Lichenysin (LIC). Molecular docking was used to predict and analyze the binding interactions between these five ligands and target protein SOD. The resulting protein–ligand complexes were further analyzed for their motions and interactions of atoms and molecules over 250 ns using molecular dynamics (MD) simulation analysis. The analysis of MD simulations suggests, Bacillibactin as the probable candidate to arrest the activities of SOD. All the five compounds reported in this study were found to act by directly/indirectly interacting with ROS molecules, such as superoxide radicals (O2–) and hydrogen peroxide (H2O2), and transforming them into less reactive species. This antioxidant activity contributes to its protective effects against oxidative stress-induced damage in cells making them likely candidate for various applications, including in the development of antioxidant-based therapies, nutraceuticals, and functional foods.

12 October 2023 in Biomolecules
Verified
Journal Article
Open access
PDF file
DYDeepak A Yaraguppi
Deepak A Yaraguppi
ZBZabin K. Bagewadi
Zabin K. Bagewadi
NPNINGANAGOUDA R PATIL
NINGANAGOUDA R PATIL
NMNitin Mantri
Nitin Mantri
This comprehensive review examines iturin, a cyclic lipopeptide originating from Bacillus subtilis and related bacteria. These compounds are structurally diverse and possess potent inhibitory effects against plant disease-causing bacteria and fungi. Notably, Iturin A exhibits strong antifungal properties and low toxicity, making it valuable for bio-pesticides and mycosis treatment. Emerging research reveals additional capabilities, including anticancer and hemolytic features. Iturin finds applications across industries. In food, iturin as a biosurfactant serves beyond surface tension reduction, enhancing emulsions and texture. Biosurfactants are significant in soil remediation, agriculture, wound healing, and sustainability. They also show promise in Microbial Enhanced Oil Recovery (MEOR) in the petroleum industry. The pharmaceutical and cosmetic industries recognize iturin’s diverse properties, such as antibacterial, antifungal, antiviral, anticancer, and anti-obesity effects. Cosmetic applications span emulsification, anti-wrinkle, and antibacterial use. Understanding iturin’s structure, synthesis, and applications gains importance as biosurfactant and lipopeptide research advances. This review focuses on emphasizing iturin’s structural characteristics, production methods, biological effects, and applications across industries. It probes iturin’s antibacterial, antifungal potential, antiviral efficacy, and cancer treatment capabilities. It explores diverse applications in food, petroleum, pharmaceuticals, and cosmetics, considering recent developments, challenges, and prospects.

12 March 2020 in Journal of Petroleum Exploration and Production Technology
Verified
Journal Article
Open access
PDF file
DYDeepak A Yaraguppi
Deepak A Yaraguppi
ZBZabin K. Bagewadi
Zabin K. Bagewadi
UMUday M. Muddapur
Uday M. Muddapur
SMSikandar I. Mulla
Sikandar I. Mulla
A potential biosurfactant producing isolate was identified as Bacillus aryabhattai strain ZDY2. Biosurfactant production was enhanced by 2.51-fold through the development of an optimized process using response surface methodology. The optimized culture medium contained crude oil 4.0%, yeast extract 0.7% and NaNO3 3.0% that yielded 8.86 g/l of biosurfactant. Biosurfactant was characterized for stability up to 100 °C, at pH 5–10 and in the presence of NaCl concentration up to 8%. Biosurfactant demonstrated antimicrobial activity against Salmonella typhimurium, Escherichia coli, Micrococcus luteus, Staphylococcus aureus and Candida tropicalis. The morphological characterization was carried out by scanning electron microscopy with energy-dispersive X-ray analysis. The Fourier-transform infrared spectroscopy analysis reveals the lipopeptide nature of the biosurfactant produced by B. aryabhattai strain ZDY2. The biosurfactant finds application in healthcare and pharmaceutical industries.

1 May 2020 in Carbohydrate Research
Verified
Journal Article
Closed access
ZBZabin K. Bagewadi
Zabin K. Bagewadi
JBJayateerth S Bhavikatti
Jayateerth S Bhavikatti
UMUday M. Muddapur
Uday M. Muddapur
DYDeepak A Yaraguppi
Deepak A Yaraguppi
SMSikandar I. Mulla
Sikandar I. Mulla

22 April 2022 in Molecules
Verified
Journal Article
Open access
PDF file
Ibrahim Ahmed ShaikhIbrahim Ahmed Shaikh
Ibrahim Ahmed Shaikh
UMUday M Muddapur
Uday M Muddapur
ZBZabin K. Bagewadi
Zabin K. Bagewadi
SCSneha Chiniwal
Sneha Chiniwal
MGMohammed M. Ghoneim
Mohammed M. Ghoneim
SISyed Mohammad Shakeel Iqubal
Syed Mohammad Shakeel Iqubal
The applications of bioactive compounds from medicinal plants as therapeutic drugs are largely increasing. The present study selected the bioactive compounds from Acacia concinna (A. concinna) and Citrus limon (C. limon) to assess their phytochemicals, proteins, and biological activity. The plant material was collected, and extraction performed as per the standard procedure. Qualitative analysis was undertaken, and identification of functional organic groups was performed by FTIR and HPLC. Antibacterial, anticancer, antioxidant, antihyperglycemic, antihyperlipidemic, and inhibition kinetics studies for enzymes were performed to assess the different biological activities. Flavonoids and phenols were present in a significant amount in both the selected plants. A. concinna showed significant antimicrobial activity against Z. mobilis, E. coli, and S. aureus, with minimum inhibition zones (MIZ) of 24, 22, and 20 mm, respectively. C. limon strongly inhibited all the tested pathogenic bacteria with maximum and minimum MIZ of 32 and 17 mm. A. concinna silver nanoparticles also exhibited potent antimicrobial activity. Both extracts showed substantial antioxidant, antihyperlipidemic, antidiabetic, anticancer (MCF-7), and anti-urease (antiulcer) properties. To conclude, these plants can be used to treat hyperlipidemia, diabetes, cancer, and gastrointestinal ulcers. They can also serve as antimicrobial and antioxidant agents. Thus, the studied plants must be exploited cost-effectively to generate therapeutic drugs for various diseases.

5 December 2022 in Process Biochemistry
Verified
Journal Article
Closed access
ZBZabin K. Bagewadi
Zabin K. Bagewadi
VDVenessa Dsouza
Venessa Dsouza
DYDeepak A Yaraguppi
Deepak A Yaraguppi
SMSikandar I. Mulla
Sikandar I. Mulla
SDSanjay Deshpande
Sanjay Deshpande
SSShreya S. Shettar
Shreya S. Shettar